Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02563 atgttcTCAAactttcaacaacaacaacaacataaccTATTCCAACCCTCTCGTGAATGCCAAACATCAGAAGAAGATGAAACCCGTAGCAGCGGTGGGCCAAGCCCAATAACAGCCCACAAGCCTTTCTCCGGAAGTGCCGACGGTTCCACTGTTGAGATTGGTCGTAGGCCCAGGGGCCGTCCGCCTGGCTCCAAAAACAAGCCCAAAACCCAAATCATAATTAATCGCCAGCCTGAGCCCGCGATGAGCTCACACATTCTTGAAATCCCTGAAGGCAGCGATGTGGTTGAAGCAATAGCCCGGTTCAGTAACCGAAGAAAAACCAGTTTATGTGTATTAACCGGTTCAGGTACCGTCGCTAACGTTACACTCCGTCAAATATCTGCTCCTCCTGGCACCACCGTTACTTTTCACGGCCGTTTTAACATTCTCTCAATCTCTGCAACGTTCTTTTCCCCATCGGAACCCTCACCGCCTATCCAAAAAGAATTCTCGATCTCTCTCGCCGGACCTCAGGGTCAGATCGTTGGAGGGTTTGTCGTTGGACGGTTGCTTGCCGTCAGCGTGGTGTTTGTGATTGCGGCTTCTTTTAACAATCCATCTTATCATAGGTTGCCTTTGGAAGAGGATGTTATGAATAACTCAGTCTccggtggtggtggtgctgGTGGTGATGAGAAGTCCCCACCGCAGCTCACCGACGGTGGGGAGTCGTGTATGTATAGCGCTCAACTACCTTCGGATGTGATTTGGGCTACAACGCCAAGAACACATTTCTGA 783 0.47 MFSNFQQQQQHNLFQPSRECQTSEEDETRSSGGPSPITAHKPFSGSADGSTVEIGRRPRGRPPGSKNKPKTQIIINRQPEPAMSSHILEIPEGSDVVEAIARFSNRRKTSLCVLTGSGTVANVTLRQISAPPGTTVTFHGRFNILSISATFFSPSEPSPPIQKEFSISLAGPQGQIVGGFVVGRLLAVSVVFVIAASFNNPSYHRLPLEEDVMNNSVSGGGGAGGDEKSPPQLTDGGESCMYSAQLPSDVIWATTPRTHF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02563 260 MobiDBLite consensus disorder prediction 1 72 - -
Tsu05g02563 260 MobiDBLite consensus disorder prediction 1 19 - -
Tsu05g02563 260 Gene3D - 84 216 - -
Tsu05g02563 260 MobiDBLite consensus disorder prediction 217 239 - -
Tsu05g02563 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 200 IPR005175 -
Tsu05g02563 260 ProSiteProfiles PPC domain profile profile. 80 219 IPR005175 -
Tsu05g02563 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 210 - -
Tsu05g02563 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 6 257 - -
Tsu05g02563 260 PIRSF ESCAROLA 1 253 IPR014476 GO:0003680
Tsu05g02563 260 CDD DUF296 86 195 IPR005175 -
Tsu05g02563 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 257 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02563 Tsu-Chr5 34899152 34900152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02563 46 257 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 54.867 4.46e-76 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02563 - - cam:101500910 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02563 05 34899152 34900152 Tsu05g02563 05 34899152 34900152 ECH
Tsu05g02563 05 34899152 34900152 Tsu07g01449 07 12984194 12985894 PCT