Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02557 ATGATTTTGGCAAGGGAGAGTAACAGAAATCGGAAGCGTCGTTCGTGTAACACTgaatatcattatcattatgcAAAGAAGCATCATACTGAGACGGATACGGCTGATGATTACAAAGACAGTGCACAAGTTGTTGAGATTATTCGCAATCGTTCACCAAGATGTTTACATTTGTGGTTTCACGGTGATGGGTTTACCACAATAGCAAAGCTTCAAGGACACAAGAAGCTTATCACTGGAATGACAATTCCTCGTGGATCAGACAAACTTTATACTGGCAGCACTGATTGGACAGTTCGGACATGGGATTACCACACTGGACAATGTGTTAATGTGGCAAATCTTGGCAGCGAAGTTACCTCTTTGATCAGCGACGGCCCGTGGATTTTTGTTGGTCTGCTAAACACTGTCATGGCATATAATATTGACACTGCTTCACAGTATACTCTTGATGGACCTATCGGGCAAGTCCATGCCATGACTGTTGGCAATGATACACTTTTAGCTGGAGCAGAGAATGGTGTAATTTCTGCATGGGGAGGTAGCTCTGAAGGCAATTCACCTTTTAAACTTGTTGCATCACTGCATGGCCACACTAAATCTGTTGTTTGCCTTGTCATTGGAACGCTCACGAAGCTGTATTCAGGATCTGAGGACCAAAGTATTAAGGTTTGGGACCTTGAAACATTTGAGTGTAAGACGACACTCAATGCACATATAGATACAGTCACATCCCTTATTTGTTGGGACGGATTTTTGTTATCCGGTTCGTCTGATTGCACCATCAAGGTCTGGTTTCAACTCAAAGGGGGGAATTTTGAAGTTAAGCATACACAAAATGTGGAAAATGGTGTTGTTGCAATTTCTGGCATGCATGATCCAGATATGAAGCCTATATTGTTATGTTCTACCAGAGACAATTCGGTTCACCTCTATGAACTGCCATCATTTGTCGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGATTAGCTTATGCAGGTCCCAGTGGACACTTTTTCACTGGAGACGGAAGTGGGTTGCTGACAGTCTCGAAATGGTTGGGAGAGTACAAGGATGTAAGATCCTCTTGA 1095 0.4237 MILARESNRNRKRRSCNTEYHYHYAKKHHTETDTADDYKDSAQVVEIIRNRSPRCLHLWFHGDGFTTIAKLQGHKKLITGMTIPRGSDKLYTGSTDWTVRTWDYHTGQCVNVANLGSEVTSLISDGPWIFVGLLNTVMAYNIDTASQYTLDGPIGQVHAMTVGNDTLLAGAENGVISAWGGSSEGNSPFKLVASLHGHTKSVVCLVIGTLTKLYSGSEDQSIKVWDLETFECKTTLNAHIDTVTSLICWDGFLLSGSSDCTIKVWFQLKGGNFEVKHTQNVENGVVAISGMHDPDMKPILLCSTRDNSVHLYELPSFVERGRLFAKQEVGLAYAGPSGHFFTGDGSGLLTVSKWLGEYKDVRSS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02557 364 SMART WD40_4 272 313 IPR001680 GO:0005515
Tsu05g02557 364 SMART WD40_4 229 266 IPR001680 GO:0005515
Tsu05g02557 364 SMART WD40_4 188 226 IPR001680 GO:0005515
Tsu05g02557 364 SMART WD40_4 64 103 IPR001680 GO:0005515
Tsu05g02557 364 SMART WD40_4 143 180 IPR001680 GO:0005515
Tsu05g02557 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 71 108 - -
Tsu05g02557 364 ProSitePatterns Trp-Asp (WD) repeats signature. 213 227 IPR019775 -
Tsu05g02557 364 Gene3D - 53 185 IPR015943 GO:0005515
Tsu05g02557 364 PRINTS G protein beta WD-40 repeat signature 90 104 IPR020472 -
Tsu05g02557 364 PRINTS G protein beta WD-40 repeat signature 213 227 IPR020472 -
Tsu05g02557 364 PRINTS G protein beta WD-40 repeat signature 253 267 IPR020472 -
Tsu05g02557 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 229 - -
Tsu05g02557 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 235 IPR001680 GO:0005515
Tsu05g02557 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 47 362 - -
Tsu05g02557 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 71 112 IPR001680 GO:0005515
Tsu05g02557 364 Pfam WD domain, G-beta repeat 68 103 IPR001680 GO:0005515
Tsu05g02557 364 Pfam WD domain, G-beta repeat 231 265 IPR001680 GO:0005515
Tsu05g02557 364 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Tsu05g02557 364 Gene3D - 186 354 IPR015943 GO:0005515
Tsu05g02557 364 PANTHER - 47 362 IPR044715 -
Tsu05g02557 364 SUPERFAMILY WD40 repeat-like 57 348 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02557 Tsu-Chr5 34810025 34811844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02557 58 276 Eukaryotic Initiation Factors Gene Family AT2G46290 24.066 9.30e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02557 - - mtr:MTR_8g032850 464.151