Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02551 ATGGCACCACcaagttttgattttccaaGTCTGTTTTGTCATGAAGACAGTAGcatttttgatgaaaatgatTCATTTGAGATGTTGGATGAATCATCATGGCAAGATGAATGTGATCCATACCTGAATCAAATTCCGCAATTTGATGATGACTCAACTCAGAAATTCAATGAACCAATTGTCTTGATTCCACCACCAATGTTGAGTGATGAAAGTTTGAAGGATTTGGTTGCAAAAGAATGTCATCACTTGCCTGCTAGTGACTATGTCAATAGGCTGAAATATGGGGATTTGGATTTGCAGGAAAGAATGGAGGCTGTTGATTGGATTGAAAAGGTTGGAGTGCATTTTGGTTTTGGACCTCTCTGTTTATACCTAGCTATAAGCTTCATGGATCGCTTCCTTTCTGTAGTTGAAATGCTGACGGAAAGAACTTGGTCATTTCAACTCTTGGCGGTAGGTTGCTTGTATCTGGCAGCTAAAATCGATGAAACTGTAGTTCCTCGAACTGTTGATATGCAGatgaaagaaaagaagtaTTTATTTGATAACAAAACAATGCTGAAAATGGAGCTAATGGTGCTAAGCACATTGAAGTGGAGAATGCTAGGAATTACACCTTTCTCCTACATTGACTATTTCCTTAACAAAGTTAATGGTGAACAAGTTCCAATAGGAGATTCAGTGTTGCAATCTTTCCAACTCATACTCAGTACTGTAAGAGGAATTGACTTCATTCAATTCAGACCATCTGAAATTGCAGCAGCTGTTGCAGTGACATTATCTGTGAAGGGTGAAAATCAAACTGTTCGCACTGAGAAAGCAGTTTCTCTTCTGATTGAATATGTAGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTATCATCTAATAGTCTTGATTCTGCAAAAGATACAAATGCTTCTTCTGAATATTTCTCTCATGTGTTGGAAGATCTGTGCCTCAACTACAAAAGTGATgatgacaacaacaaaaatgctACTTCACCACAAGCAAATTCTGCACACAATAGTCCTGAAGCTAAACGCAAGAAACCTAAcatataa 1077 0.3538 MAPPSFDFPSLFCHEDSSIFDENDSFEMLDESSWQDECDPYLNQIPQFDDDSTQKFNEPIVLIPPPMLSDESLKDLVAKECHHLPASDYVNRLKYGDLDLQERMEAVDWIEKVGVHFGFGPLCLYLAISFMDRFLSVVEMLTERTWSFQLLAVGCLYLAAKIDETVVPRTVDMQMKEKKYLFDNKTMLKMELMVLSTLKWRMLGITPFSYIDYFLNKVNGEQVPIGDSVLQSFQLILSTVRGIDFIQFRPSEIAAAVAVTLSVKGENQTVRTEKAVSLLIEYVEKEKVMKCIEMIQQLSSNSLDSAKDTNASSEYFSHVLEDLCLNYKSDDDNNKNATSPQANSAHNSPEAKRKKPNI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02551 358 Pfam Cyclin, C-terminal domain 205 310 IPR004367 -
Tsu05g02551 358 ProSitePatterns Cyclins signature. 103 134 IPR006671 -
Tsu05g02551 358 SUPERFAMILY Cyclin-like 186 298 IPR036915 -
Tsu05g02551 358 MobiDBLite consensus disorder prediction 330 358 - -
Tsu05g02551 358 PANTHER CYCLINS 4 355 IPR039361 -
Tsu05g02551 358 SMART Cyclin_C_2 205 323 IPR004367 -
Tsu05g02551 358 SUPERFAMILY Cyclin-like 66 202 IPR036915 -
Tsu05g02551 358 SMART cyclin_7 108 196 IPR013763 -
Tsu05g02551 358 Gene3D - 73 294 - -
Tsu05g02551 358 Gene3D - 86 203 - -
Tsu05g02551 358 Pfam Cyclin, N-terminal domain 74 202 IPR006671 -
Tsu05g02551 358 MobiDBLite consensus disorder prediction 330 347 - -
Tsu05g02551 358 CDD CYCLIN 103 195 IPR013763 -
Tsu05g02551 358 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 4 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02551 Tsu-Chr5 34669762 34672802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02551 41 338 Core Cell Cycle Gene Families AT2G22490 38.511 5.83e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02551 K18810 - gmx:100803873 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02551 05 34669762 34672802 Tsu05g02551 05 34669762 34672802 ECH