Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02531 atgtcaGGTAGAATGGATTTTTTCAACAATTCACAAGATCCATTGAATGGCGAGTTAATGGAAGTTCTTGAACCTTTTATGAAGAGTTCTTCCACTACTACTActccatcttcatcttcaactttACCTTCAACTTCATCCCCATTTTACTCTTCTACACCCCCTTCCTATTTCCAACCCTCTCTTTCACCTTCTTTTCCTACACAGCCCAATTTCTACACAGAAAGTGGTTATTGTTCATCCATGATGACCACCTACTCAGGTAGTAGTAATTCATCAAATAGTCAAAATAATTTCATTGGCTTTGAACAACAACCACAACCAAATTCTGTTATTGGGCTAAACAACTTAACCCCATCTCAAATTAATCAGATCCAAGCCCAGATCCAGTTTCAggcccaacaacaacaaaacaacaactTATCCTTTCTTGGGCCTAAGCCCATCTCAATGAAACAGCCTGGTATACCTCCAAAGCCCACTAAGCTTTATAGAGGTGTTAGGCAAAGACATTGGGGAAAATGGGTGGCTGAGATAAGACTACCTAAAAATAGAACAAGACTTTGGCTTGGTACTTTTGATACTGCTGAAGAAGCTGCTTTAGCTTATGATAGAGCTGCTTATAGATTAAGAGGTGATTTTGCTAGACTTAATTTCCCAAACATGAAAGACCAACAAGGTTTGTTTGGTGAGTTTAAGGTTTTGCATTCATCTATTGATGCTAAACTTGATGCTATTTGTGAAAGTCTAGGTGATGTGAATAATAAACAAGGCAAGATTGAGAAAAGTGTGAAAGGTTCTAAGAAGGGTTTGAAAAAACAAGTTCAAGTTCTTCAACCTTTGGATGATGCTGTTGTTGttgaaaacaacaacaacaacaacaataacaataaggttgttgttgttgaaggcTCTTTGTCTTCTCCTGAAGGTTCTGATGATTCTTCTCCACTTTCTGATCTTACTTTTGGTGATTTTACTGAGCCACAATGGGAAAATGGTTCTGAACAATTTAATCTGCAGAAGTTTCCTTCTTATGAGATTGATTGGGATTCTCTTTGA 1062 0.339 MSGRMDFFNNSQDPLNGELMEVLEPFMKSSSTTTTPSSSSTLPSTSSPFYSSTPPSYFQPSLSPSFPTQPNFYTESGYCSSMMTTYSGSSNSSNSQNNFIGFEQQPQPNSVIGLNNLTPSQINQIQAQIQFQAQQQQNNNLSFLGPKPISMKQPGIPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYRLRGDFARLNFPNMKDQQGLFGEFKVLHSSIDAKLDAICESLGDVNNKQGKIEKSVKGSKKGLKKQVQVLQPLDDAVVVENNNNNNNNNKVVVVEGSLSSPEGSDDSSPLSDLTFGDFTEPQWENGSEQFNLQKFPSYEIDWDSL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02531 353 CDD AP2 162 221 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 352 - -
Tsu05g02531 353 MobiDBLite consensus disorder prediction 305 326 - -
Tsu05g02531 353 SUPERFAMILY DNA-binding domain 163 220 IPR016177 GO:0003677
Tsu05g02531 353 Gene3D AP2/ERF domain 163 221 IPR036955 GO:0003700|GO:0006355
Tsu05g02531 353 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Tsu05g02531 353 MobiDBLite consensus disorder prediction 28 63 - -
Tsu05g02531 353 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02531 Tsu-Chr5 34444082 34446728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02531 1 353 AP2-EREBP Transcription Factor Family AT1G78080 46.154 6.87e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g02531 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02531 K09286 - gmx:100800478 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02531 05 34444082 34446728 Tsu05g02531 05 34444082 34446728 ECH
Tsu05g02531 05 34444082 34446728 Tsu03g02106 03 22216930 22219804 PCT