Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02529 ATGACAAACCAAAATGTATTGGAAAAGTCACGATTGAATGAGAGAATTTTAGAGTTAGCAAAGTCGATTTCAAACTCTAATGGCTTAGAGTTACCAAGAGCATCAGTACCAGAATTAGTGGCTTGGTTTGTTGATGGGCTTTTTGCTCAGCCCAAAAACAATCTCATTAAACCATTGGAAGATAATAACGGCAAAGTTAACTCATGGATTGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAAACAAGGTTCCGAGAATCAGAATCGGAACCAAACTCATTGGACTCTTTTTCATCCTTCGGCGTTGAACATGTTTGATCAAATAATGTACAATTCAAATGGGAAACAAATTGTAGTTTTTCTTGATTATGATGGAACACTATCTCCAATTGTTACAGATCCAGATAGAGCTTTCATGAGTAAAAAGatGAGAGCGACACTAAAGGACATAGCAAAGCATTTCCCTACGGCCATCGTTAGTGGAAGGTGTTTGGACAAGcTATTTAGCTTTGTAAGGTTATCAGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGACCAACAAATAGGAGAAGCACTAAGAAAGGAAATAATGATGGGGTACTTTTGCAGCCTGCTAATGAATTCTTGCCCATGATAAATGAGGTTTATAAGATCTTGGTGGAAAAAACAAAGTGTGTTCCAGGGGCAATGGtggaaaataacaaattttgtttatccGTACATTTTCGCTGCGTTGATGAAAAGagttgGGCAGCATTAGCTGAACAAGTAAGCTTAGTGTTGAATGAGTATCCAAAGTTGAAGCTAACACAAGGGAGAAAAGTTTTGGAGATTCGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGTTAGAGTCACTTGgTTTTGCAAATTCTAACAACGTATTTCCAATCTATATTGGTGATGATCGAACTGATGAAGATGCTTTCAAGGTTTTAAGCAATAGGGGTCAAGGCAGTGGAATTCTTGTTTCTAAAATTCCGAAAGAAACCAATGCTTCATACACTTTGCAAGACCCATCAGAGgTTGGAGAATTTTTGAGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCCCACAAGTAG 1131 0.3731 MTNQNVLEKSRLNERILELAKSISNSNGLELPRASVPELVAWFVDGLFAQPKNNLIKPLEDNNGKVNSWIDSMRASSPTRTKQGSENQNRNQTHWTLFHPSALNMFDQIMYNSNGKQIVVFLDYDGTLSPIVTDPDRAFMSKKMRATLKDIAKHFPTAIVSGRCLDKLFSFVRLSELYYAGSHGMDIKGPTNRRSTKKGNNDGVLLQPANEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRCVDEKSWAALAEQVSLVLNEYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSNNVFPIYIGDDRTDEDAFKVLSNRGQGSGILVSKIPKETNASYTLQDPSEVGEFLRHLVDWKRTSSRSHK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02529 376 Pfam Trehalose-phosphatase 121 355 IPR003337 GO:0003824|GO:0005992
Tsu05g02529 376 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 376 IPR044651 GO:0004805|GO:0005992
Tsu05g02529 376 CDD HAD_TPP 119 359 - -
Tsu05g02529 376 Gene3D - 120 351 IPR023214 -
Tsu05g02529 376 SUPERFAMILY HAD-like 119 368 IPR036412 -
Tsu05g02529 376 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 120 328 IPR006379 -
Tsu05g02529 376 TIGRFAM T6PP: trehalose-phosphatase 116 365 IPR003337 GO:0003824|GO:0005992
Tsu05g02529 376 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 376 - -
Tsu05g02529 376 Gene3D - 209 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02529 Tsu-Chr5 34407033 34409458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02529 114 366 Trehalose Biosynthesis Gene Families AT1G23870 25.000 1.47e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02529 K01087 - gmx:100792915 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02529 05 34407033 34409458 Tsu05g02529 05 34407033 34409458 ECH
Tsu05g02529 05 34407033 34409458 Tsu03g02109 03 22249370 22251902 PCT