Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02509 ATGAACACCGAAGGTCGAACACAAGGAGAAAATAATACCATTGGAAGCAATTCTACCACAAGAGGTGAAAGGTTTGAAAATAACACTATTGGATCAAGTTCTATACAAAACTCACAAGTGGAACCAGAGCCGCGGTGGTTACAGTACCTAAGAAATCGGCAGAGAAGGAGAGAAGAAATTATGAACAATATTGACCATGAAAATTTTGAGTATGTGGATGAGGAGAGCCCAGAAGATAATCAATCGTCTCGCCTTGGTTTGGTAAGGTCACCCACCTTTTACATAGGTGATCTCCCAAACCAAGGTATAAACCGACATATGTTAAGCCATATTCAACAATCAAATCATGATTATGAAATTGAGCTGTGGTGGCGGTCTGAACTAAGCAATCAGCAGATACAGAGATTGTCTGACCTAGCCAATCAGGGGATACAGAGAGAAGCAATTATGAACAATATTGGCCGTGAAAATTTTGAGGTTGTGGATGAGTGTCCAGAAAATATATCATTGTGTCCCATTTGTCAGGAAAACTATGTCCTTGGAGAAGAAATCGGTAGATTGGATTGTGCACATAGATTTCACATGGACTGCATTCAAGAATGGCTCCTAATAAGGAATGTATGTCCCCTTTGCAATCGAATGGGGTTATATGTCAACAATTGGTGA 666 0.4009 MNTEGRTQGENNTIGSNSTTRGERFENNTIGSSSIQNSQVEPEPRWLQYLRNRQRRREEIMNNIDHENFEYVDEESPEDNQSSRLGLVRSPTFYIGDLPNQGINRHMLSHIQQSNHDYEIELWWRSELSNQQIQRLSDLANQGIQREAIMNNIGRENFEVVDECPENISLCPICQENYVLGEEIGRLDCAHRFHMDCIQEWLLIRNVCPLCNRMGLYVNNW 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02509 221 MobiDBLite consensus disorder prediction 1 41 - -
Tsu05g02509 221 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Tsu05g02509 221 SMART ring_2 171 211 IPR001841 -
Tsu05g02509 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 218 IPR045191 GO:0061630
Tsu05g02509 221 SUPERFAMILY RING/U-box 170 214 - -
Tsu05g02509 221 Pfam Ring finger domain 171 212 IPR001841 -
Tsu05g02509 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 215 IPR013083 -
Tsu05g02509 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR1-LIKE 140 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02509 Tsu-Chr5 34205072 34207319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02509 134 216 C3H Transcription Factor Family AT2G15530 36.782 1.81e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02509 - K17821 mtr:MTR_5g068000 116.701