Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu05g02509 | ATGAACACCGAAGGTCGAACACAAGGAGAAAATAATACCATTGGAAGCAATTCTACCACAAGAGGTGAAAGGTTTGAAAATAACACTATTGGATCAAGTTCTATACAAAACTCACAAGTGGAACCAGAGCCGCGGTGGTTACAGTACCTAAGAAATCGGCAGAGAAGGAGAGAAGAAATTATGAACAATATTGACCATGAAAATTTTGAGTATGTGGATGAGGAGAGCCCAGAAGATAATCAATCGTCTCGCCTTGGTTTGGTAAGGTCACCCACCTTTTACATAGGTGATCTCCCAAACCAAGGTATAAACCGACATATGTTAAGCCATATTCAACAATCAAATCATGATTATGAAATTGAGCTGTGGTGGCGGTCTGAACTAAGCAATCAGCAGATACAGAGATTGTCTGACCTAGCCAATCAGGGGATACAGAGAGAAGCAATTATGAACAATATTGGCCGTGAAAATTTTGAGGTTGTGGATGAGTGTCCAGAAAATATATCATTGTGTCCCATTTGTCAGGAAAACTATGTCCTTGGAGAAGAAATCGGTAGATTGGATTGTGCACATAGATTTCACATGGACTGCATTCAAGAATGGCTCCTAATAAGGAATGTATGTCCCCTTTGCAATCGAATGGGGTTATATGTCAACAATTGGTGA | 666 | 0.4009 | MNTEGRTQGENNTIGSNSTTRGERFENNTIGSSSIQNSQVEPEPRWLQYLRNRQRRREEIMNNIDHENFEYVDEESPEDNQSSRLGLVRSPTFYIGDLPNQGINRHMLSHIQQSNHDYEIELWWRSELSNQQIQRLSDLANQGIQREAIMNNIGRENFEVVDECPENISLCPICQENYVLGEEIGRLDCAHRFHMDCIQEWLLIRNVCPLCNRMGLYVNNW | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu05g02509 | 221 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Tsu05g02509 | 221 | ProSiteProfiles | Zinc finger RING-type profile. | 171 | 212 | IPR001841 | - | |
Tsu05g02509 | 221 | SMART | ring_2 | 171 | 211 | IPR001841 | - | |
Tsu05g02509 | 221 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF165 | 140 | 218 | IPR045191 | GO:0061630 | |
Tsu05g02509 | 221 | SUPERFAMILY | RING/U-box | 170 | 214 | - | - | |
Tsu05g02509 | 221 | Pfam | Ring finger domain | 171 | 212 | IPR001841 | - | |
Tsu05g02509 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 215 | IPR013083 | - | |
Tsu05g02509 | 221 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MBR1-LIKE | 140 | 218 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu05g02509 | Tsu-Chr5 | 34205072 | 34207319 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu05g02509 | 134 | 216 | C3H Transcription Factor Family | AT2G15530 | 36.782 | 1.81e-15 | 72.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu05g02509 | - | K17821 | mtr:MTR_5g068000 | 116.701 |