Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02496 ATGACCGGCCAAACACTAGGGCTGGAAGATCCAACGGAGAAAAACAACTCAGTACCCACCATAGTGGTAATTGTAGCCCTTATGTTCCTCTTCTCCATTTTCCTTTCTTTATATCAAGCTAGATGCAACCATCGTCAACCAGGGGTAAGTTTCGACCTTAGTTTACCTATCGGCGAAAACAGTCTCCAGGCACAAAACAATGAGCCAATTAACGGTCTCAACCAAGATGTTATCGACACATTCCCAACTTTTCGTTACTCTAACGTAAAGGGACTTAAGATTGGAAAAAGCACTCTGGCTTGTGCTGTTTGCTTGAATGAGTTTCAAGACGATGAAACATTGCGTTTAATCCCCAAATGTAGTCATGTGTACCACCATGGTTGCATCGATATTTGGCTTGTTTCTCATAATACTTGCCCTGTTTGTCGTGCTAACCTTGATCCAAGACCTGAAGACACAATTGTACCTCCAACTATAACCATTCAAATACCAGAAGGAGAATTACATCGTAATGAGGAAGAAGTAGATCTCGGTATTCATGAAGAACAAAAGAGTGACAACATTGAAGTGGAATATTCAAAAAAGGTAAATTTACTTCGTAGGTCTCACACATATTGTGCATCAGCACGATCAAGATCAACAGGATTCTTAATAATGTTATCACGGTCGAATTCAACGGGTGTGTTGGTGAAACCAGGTGAAGATTTTGAGAGGTTTACATTGAGGTTACCTGATGAAGTACGACATCATATGATGATGAATACAACTATGCATAAGCGTGCAAAAAGTTGTGTGAGTTTTACGAGAATGAGCAGTGGCATGTGCGGTTATAGGTCAAAAAGTGTTGGGTGTGGAAGTGGGTGGGGTCACATGCATTACAAAAGGTTTAGAAATGAGGAGGAAGAGAACTTAGGGTTTGTTAGAAACAATTGGAATAATAAATTCAATAGAAAATCTCCGGTGAAATGTTTGGAAGTTAATATGGACAATAATGGAGGTGAGTGA 1005 0.399 MTGQTLGLEDPTEKNNSVPTIVVIVALMFLFSIFLSLYQARCNHRQPGVSFDLSLPIGENSLQAQNNEPINGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLDPRPEDTIVPPTITIQIPEGELHRNEEEVDLGIHEEQKSDNIEVEYSKKVNLLRRSHTYCASARSRSTGFLIMLSRSNSTGVLVKPGEDFERFTLRLPDEVRHHMMMNTTMHKRAKSCVSFTRMSSGMCGYRSKSVGCGSGWGHMHYKRFRNEEEENLGFVRNNWNNKFNRKSPVKCLEVNMDNNGGE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02496 334 CDD RING-H2_EL5_like 101 143 - -
Tsu05g02496 334 SMART ring_2 101 142 IPR001841 -
Tsu05g02496 334 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 283 - -
Tsu05g02496 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 149 IPR013083 -
Tsu05g02496 334 PANTHER RING FINGER DOMAIN-CONTAINING 2 283 - -
Tsu05g02496 334 Pfam Ring finger domain 100 143 IPR001841 -
Tsu05g02496 334 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Tsu05g02496 334 SUPERFAMILY RING/U-box 95 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02496 Tsu-Chr5 33950078 33951082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02496 17 259 Rapid Response to Elicitors AT3G05200 39.600 2.43e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02496 K10664 - gmx:100814384 285.034