Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02494 ATGGCTTATCCACATTATCGATCACAGTTTGGAGACACAACATTCACTAAGGTTTTTGTTGGAGGATTAGCTTGGGAAACACCAACTGATGAAATGAGAACATATTTTGAACAATTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACCGGAAAATCTAAAGGATATGGATTTGTAACATTTCGTGATCCAGAATCAGCTAGAAGAGCTTGTGCTGATCCAAACCCAGTAATAGATGGAAGAAGAGCTAATTGTAACATTGCTTCTCTAGGACGTCCTAGACCATCACCACCAAGAgGGAGGGGTACATATCAAGGTGGAGGGATGGGGACTGGAGCACCAGGAACAGGTGCGGCGTATGGTGGTGTTCCGGCAGGAGGGCCACCACAATTAGCAGGAGGAGCAGGAACTCCAGTAATGTACCAACCATATGGCTACCCTACCTACACTCCTGAATATGGGTACCATCAAGCTACAATGTATAACCCACAGATGCAACAAGCACAATACTATCAACAACTCTATGGACCATCATCTTCAACAATGGCTTCACCATATTACTATGGCTATTCTGTGCAAGCAGCATCTGCACCAAGGGGAGGTACATTTTCTACTCCTCAACCACATCGTATGCAGGCTGGACCATCGTATCTATACTATCCTCCTACACCAATCGAAGGAGGTTCCTTCTCTCCGGCAGCATATCGTCCAATTCAACAACAACCTTTAATAAGGCACCCTTCTCCTTCTCCTTCCCCTTCACCTAATGATTCACAGACACAGCAACGTATCTCATCAGAGACAGCATCTGGAGTAGTTATAACTTCGGAAAGTTCAAATACTCAAGGGAAGAACAACAACTAA 873 0.441 MAYPHYRSQFGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTYQGGGMGTGAPGTGAAYGGVPAGGPPQLAGGAGTPVMYQPYGYPTYTPEYGYHQATMYNPQMQQAQYYQQLYGPSSSTMASPYYYGYSVQAASAPRGGTFSTPQPHRMQAGPSYLYYPPTPIEGGSFSPAAYRPIQQQPLIRHPSPSPSPSPNDSQTQQRISSETASGVVITSESSNTQGKNNN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02494 290 PANTHER GEO13361P1-RELATED 1 278 - -
Tsu05g02494 290 MobiDBLite consensus disorder prediction 258 290 - -
Tsu05g02494 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Tsu05g02494 290 SMART rrm1_1 17 89 IPR000504 GO:0003723
Tsu05g02494 290 MobiDBLite consensus disorder prediction 90 115 - -
Tsu05g02494 290 Gene3D - 3 113 IPR012677 -
Tsu05g02494 290 MobiDBLite consensus disorder prediction 232 290 - -
Tsu05g02494 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Tsu05g02494 290 SUPERFAMILY RNA-binding domain, RBD 9 120 IPR035979 GO:0003676
Tsu05g02494 290 CDD RRM_RBM24_RBM38_like 16 91 - -
Tsu05g02494 290 PANTHER - 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02494 Tsu-Chr5 33878359 33884991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02494 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.93e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02494 K25006 - gmx:100787086 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02494 05 33878359 33884991 Tsu05g02494 05 33878359 33884991 ECH