Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02492 ATGAATCAAAAGGATCTTCAGCCTCTACCATTGCTAAGTAGCTTCCTAGGTTCAACATCACAAGAACCTTTGcaacaaaatgaaaatcaaaactCATGCTATAATCAAGCTGAGGATGTCACAGTGGCCTTGCACATAGGACTTCCTCACAATTCAATTGAATCACCAATTGATAATGGTTTTGTGAATGTCCCAAATCATGTGCCTAACAATTACTGGATACCTACTCAAGAACAGATTCTCATTGGATTCAGTCATTTCTCTTGTCCTGTTTGCCACAAAACTTTCAATCGTTACAACAACCTTCAGATGCATATGTGGGGACACGGTTCGCAGTATCGAAGAGGACCAGACTCGCTGAAAAGAACTCATCCACGACCGCTGTTAGACCTTCCATGCTATTGTTGTTCAAAGGGATGTAAGAACAACATTGAGCACCCAAGAGCTAAGCCATTGAAAGATTTCAGAACATTGCAAACACATTACAAGAGAAAGCACGGCTCGAAGACATTTACTTGTCGAAAATGTGGGAAGCCATTGGCAGTGAAAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAGCGTTGGCTTTGTATTTGTGGTTCTGATTTCAAACACAAGAGATCACTTAAAGATCATATCAAAGCATTTGGATTTGGTCATAgccctttttcttcttcctctgatGGCATTTGA 699 0.382 MNQKDLQPLPLLSSFLGSTSQEPLQQNENQNSCYNQAEDVTVALHIGLPHNSIESPIDNGFVNVPNHVPNNYWIPTQEQILIGFSHFSCPVCHKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDLPCYCCSKGCKNNIEHPRAKPLKDFRTLQTHYKRKHGSKTFTCRKCGKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIKAFGFGHSPFSSSSDGI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02492 232 PANTHER ZINC FINGER PROTEIN WIP2 5 226 IPR043584 GO:0003700|GO:0010468
Tsu05g02492 232 Pfam Zinc finger, C2H2 type 87 106 IPR013087 -
Tsu05g02492 232 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tsu05g02492 232 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 226 - -
Tsu05g02492 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tsu05g02492 232 SUPERFAMILY beta-beta-alpha zinc fingers 82 109 IPR036236 -
Tsu05g02492 232 SMART c2h2final6 134 166 IPR013087 -
Tsu05g02492 232 SMART c2h2final6 171 191 IPR013087 -
Tsu05g02492 232 SMART c2h2final6 87 109 IPR013087 -
Tsu05g02492 232 Gene3D Classic Zinc Finger 86 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02492 Tsu-Chr5 33851996 33853383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02492 40 228 C2H2 Transcription Factor Family AT1G34790 66.176 1.80e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g02492 zf-C2H2 0.00054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02492 - - cam:101514022 443.351