Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02486 ATGGAGCGCTATGAGGTTGTCAAAGATATTGGTTCTGGGAATTTTGCTGTTGCAAAGCTAGTTAGAGATATCTTCACCAAAGAGCTTTTTGCTGTTAAGTTTATTGAAAGAGGCCAAAAGATTGATGAGCATGTCCAGAGGGAAATCATGAATCATAGATCATTGAAGCATCCTAATATTGTTAGATTCAAAGAGGTCCTGCTAACACCAACACATCTAGCCATAGTAATGGAGTATGCTGCTGGAGGAGAACTCTTTGAGAGGATATGCAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGGTTTTTCTTTCAGCAACTGATATCTGGAGTCAGTTACTGTCATTCAATGCAAATCTGCCATAGAGATTTGAAGCTTGAAAACACACTCTTAGATGGAAGCACTGCACCACGAGTCAAAATTTGTGACTTTGGTTACTCAAAGTCATCTGTGTTGCATTCACAACCGAAGTCGACGGTAGGAACTCCCGCTTACATTGCACCTGAAGTTCTGACAAAGAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGCGGAGTCACTTTATACGTGATGTTAGTCGGCGCATATCCTTTTGAAGACCCTGAGGATCCAAGAAACTTTAGGAAAACAATTGGTAAGATACTTAGTGTCCAGTACAAAGTCCCTGATTTCGTACGAGTTTCATCGGAATGTATACATCTTATATCTCAAATATTTGTGGCTAATCCTGAAAAGAGAATAACAATACCAGAAATAAAAAACCATCCATGGTTTTTGAAGAACTTACCAGTAGAATTAATGGAAGGTGGAAGCTGGCAAACAAATGATGTAAATAATCCATCACAAAGTGTTGATGAAATCCTGTCCATTATACAAGAGGCAAGAAAACCTCTTAACATCCCAAAGATTGGTGGACTTCTTAGTGGAACTAGCATGGACCTAGATGATTTTGATGCTGACATAGATCTTGAAGATATAGACACATTTGGTGATTTTGTTTGCCCTCCTCTTTAA 1020 0.3892 MERYEVVKDIGSGNFAVAKLVRDIFTKELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTKREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGKILSVQYKVPDFVRVSSECIHLISQIFVANPEKRITIPEIKNHPWFLKNLPVELMEGGSWQTNDVNNPSQSVDEILSIIQEARKPLNIPKIGGLLSGTSMDLDDFDADIDLEDIDTFGDFVCPPL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02486 339 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02486 339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tsu05g02486 339 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Tsu05g02486 339 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Tsu05g02486 339 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02486 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Tsu05g02486 339 SUPERFAMILY Protein kinase-like (PK-like) 1 270 IPR011009 -
Tsu05g02486 339 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02486 339 PANTHER SERINE/THREONINE KINASE 2 332 - -
Tsu05g02486 339 CDD STKc_SnRK2 3 259 - -
Tsu05g02486 339 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 2 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02486 Tsu-Chr5 33678146 33681570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02486 3 279 CBL-interacting serine-threonine protein kinases AT4G24400 41.958 5.94e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Tsu05g02486 Pkinase 4.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02486 K14498 - gmx:100798091 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02486 05 33678146 33681570 Tsu05g02486 05 33678146 33681570 ECH