Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02474 AtgttttcattgttttcaaTGCTTaactcatcttcttcttctccttcttcattCTTTTGTATCATTATTCTCATCCAAACAACACTTCTTTTtggtttctctttctcttcttctaacaATGAAGCCACAATTCTCTTCACATGGCTTCATAGTTCATCTTCACAACCACCTTCATCATTCTCTAACTGGAATATCCATGATACTAATCCATGCAACTGGACCTCCATAACATGTTCATCACTCTCTTTTGTAACTGAAATCAATATTCAATCCATTCCTCTTCAACTTCCTATACCTTCCAATCTCTCTTCATTTCCTTATCTTAACAAACTTGTCATTTCTGATTCCAATCTTACTGGAACTATTCCTTTTGATATTGGTGATTGTTCTTCACTCACTGTTATTGATCTTAGCTTTAACAATCTTGTTGGTTCTATTCCTTCAAGTATTGGAAAGTTAGAGAATCTAGTAAACTTGTCTTTGAATTCGAACCAACTTACCGGAAAAATTCCAGACGAGATAAGTACTTGCATTAGTCTCATAAATCTTCACCTTTTCGATAATCAGTTAGGTGGAAGTATCCCGAATTCGCTTGGGAAGTTGTTGAAACTCGAAGTCCTTAGAGCAGGTGGAAACAAAGATATAATTGGGAAGATTCCAGAAGAGATTGGAGAATGTAGTAATTTGACAGTTTTAGGTCTTGCTGATACAAGAATATCAGGTTCTTTACCTGTTACTTTTGGTAAACTTCAAAAGCTTCAAACTTTGTCAATTTATACAACTATGCTATCAGGTGAAATTCCTAAAGAGTTAGGTAACTGTTCTGAACTTATTGATTTGTTTCtatatgaaaatagcttatcaGGATCTATACCATCAGAGATTGGTAAGCTAAAGAAGCTTGAACAGTTGTTTTTGTGGCAGAATGGTCTTGTTGGTGCTATTCCAAATGAGATTGGAAATTGTTCAAGTTTGAGAAACATTGATCTAAGTTTGAATTCTTTATCTGGAACTATACCTTTATCTTTAGGAGGTCTTTTAGAGCTTGAAGAGTTTATGATTAGCGATAATAATGTATCTGGTTCTATTCCTTCAACTCTTTCAAATGCTGAAAAGCTTCAACAGTTGCAAGTTGATACAAATCAGCTTTCAGGTTTGATTCCACCAGAGATTGGAAAGTTGTCAAATCTTTTAGTGTTTTTTGCTTGGCAGAATCAGCTTGAAGGAAGCATTCCTTCAAGTTTAGGAAACTGTAGTAAACTTCAAGCACTTGATTTGTCTAGAAACTCACTCACTGGTAGCATTCCTTCTGGACTATTTCAGCTTCAAAACCTAACAAAACTGCTTCTGATTTCAAATGATATATCTGGTTCTATACCATCAGAAATTGGTAGTTGCATGTCTCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGAAGCATTCCTAAGACCATAGGAAGTcttaaaaatttgaactttttagATCTCTCTGGGAACCGGCTTTCTGGGCCGGTTCCCGATGAAATAAGAAGCTGCATACAACTTCAAATGATTGACTTCAGTGCTAACAACTTGGAAGGCTCACTTTCTAATTCCTTGTCGTCATTATCGTCGCTTCAGGTATTGGATGTTTCTTTTAACAAGTTTTCAGGTCCATTGCCAGCGAGTTTAGGCCGTCTTGTTTCTCTGAGTAAGTTAATCCTAGGGAATAACTTGTTTTCTGGGCCAATTCCTGCATCGGTAAGCCTGTGTTCAAATCTCCAACTTCTTGATCTTAGTAGCAATCAGCTCACCGGAAGCATACCGGCCGAATTAGGCCAAATCGAAGCACTAGAAATTGCTCTCAATCTTAGTTGCAATTTACTAAGTGGAACAATACCACCTCAGATATCTGCTCTTAACAAGCTTTCCATATTAGACATTTCACATAACCAGTTAGAAGGAGATTTGCAAACTCTTGCAGAACTTGATAACCTTGTTTCCCTCAATGTTTCTTACAACAAGTTCACAGGATATCTTCCAGATAACAACCTTTTCAGGCAGTTAACATCGAAAGACCTTACCGGAAATCAAGGACTTTGCACTTCAGGTCAGGACTTATGTTTTGTAAAGGATTCTAGCAAGACCGATATGGCATTGAATGAGCATGAGGTAAGGAAATCGCGGAGGATTAAGCTAGCGATTGGACTACTGATAACATTGACAGTAGTAATGATACTTATGGGGATAACTGCTGTCGTCAAAGCAAGAAGAACCATTCGAGATGATGATTCGGAATTAGGGGACTCATGGCCTTGGCAATTCATACCATTCCAGAAACTAAACTTTTCAGTTGAACAAGTACTGAGATGTTTGATTGATAGGAATATAATTGGTAAAGGATGTTCCGGTGTTGTTTATCGAGGTGAAATGGATAACGGAGAAGTCATTGCAGTGAAGAAACTGTGGCCTATAACAACTGATGAAGGTGAGGCATTGAAGGATTACAAAAGTGGAGTTCGAGATTCATTCTCGGCTGAGGTCAAGTGTCTTGGCTCGATTCGTCATAAGAACATTGTCAGGTTCTTAGGttgttgttggaacaagaaaacAAGATTGCTTATTTTTGATTATATGCCAAATGGAAGTTTAAGCAGTGTACTTCATGAGAGGACCGGAAACTCTCTGGATTGGGAACTTAGGTTCCGAATTTTGTTAGGTTCTGCGGAAGGACTTGCATATCTACATCATGACTGTGTTCCTCCAATAGTCCACAGAGATATTAAAGCCAATAACATCTTAATTGGTCTTGAATTTGAACCTTATATTGCGGACTTTGGCTTAGCTAAGcttgttgatgatggtgatgttgGTCGATCTTCCAATACCGTTGCTGGTTCGTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACGGAGAAGAGTGATGTTTATAGCTACGGTGTAGTATTGCTAGAAGTCTTGACTGGCAAGCAACCAATAGATCCAACAATACCAGATGGTTTACATGTTGTTGATTGGGTGAGACAGAAAAGAGGTCTTGAAGTACTTGATCCTACCTTACTTTCAAGACCGGAATCGGAAATAGAAGAAATGATCCAAGCATTAGGAATAGCCCTATTGTGTGTAAATTCATCTCCTGATGAAAGACCAACAATGAGAGATATAGCAGCAATGCTCAAAGAGATAAAGCATGAAAGAGAAGAATATGCAAAATTTGATGTGCTTTTAAAAGGGTCTCCTGCAAATGATGCAAAAGTTCTTGCAACATCTTCCAATGCATCGGTGATGCAAACTTTGAATACAAAAAGCAATAATACAAGCTTCTCTGTGTCTTCACTTCTTCATTCATCTTCAAGTTCCAAGCTGAGTTTCAAATGA 3396 0.3625 MFSLFSMLNSSSSSPSSFFCIIILIQTTLLFGFSFSSSNNEATILFTWLHSSSSQPPSSFSNWNIHDTNPCNWTSITCSSLSFVTEINIQSIPLQLPIPSNLSSFPYLNKLVISDSNLTGTIPFDIGDCSSLTVIDLSFNNLVGSIPSSIGKLENLVNLSLNSNQLTGKIPDEISTCISLINLHLFDNQLGGSIPNSLGKLLKLEVLRAGGNKDIIGKIPEEIGECSNLTVLGLADTRISGSLPVTFGKLQKLQTLSIYTTMLSGEIPKELGNCSELIDLFLYENSLSGSIPSEIGKLKKLEQLFLWQNGLVGAIPNEIGNCSSLRNIDLSLNSLSGTIPLSLGGLLELEEFMISDNNVSGSIPSTLSNAEKLQQLQVDTNQLSGLIPPEIGKLSNLLVFFAWQNQLEGSIPSSLGNCSKLQALDLSRNSLTGSIPSGLFQLQNLTKLLLISNDISGSIPSEIGSCMSLIRLRLGNNRITGSIPKTIGSLKNLNFLDLSGNRLSGPVPDEIRSCIQLQMIDFSANNLEGSLSNSLSSLSSLQVLDVSFNKFSGPLPASLGRLVSLSKLILGNNLFSGPIPASVSLCSNLQLLDLSSNQLTGSIPAELGQIEALEIALNLSCNLLSGTIPPQISALNKLSILDISHNQLEGDLQTLAELDNLVSLNVSYNKFTGYLPDNNLFRQLTSKDLTGNQGLCTSGQDLCFVKDSSKTDMALNEHEVRKSRRIKLAIGLLITLTVVMILMGITAVVKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDRNIIGKGCSGVVYRGEMDNGEVIAVKKLWPITTDEGEALKDYKSGVRDSFSAEVKCLGSIRHKNIVRFLGCCWNKKTRLLIFDYMPNGSLSSVLHERTGNSLDWELRFRILLGSAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDVGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPTLLSRPESEIEEMIQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANDAKVLATSSNASVMQTLNTKSNNTSFSVSSLLHSSSSSKLSFK 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02474 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 918 930 IPR008271 GO:0004672|GO:0006468
Tsu05g02474 1131 Gene3D Ribonuclease Inhibitor 237 337 IPR032675 -
Tsu05g02474 1131 SMART LRR_sd22_2 153 176 - -
Tsu05g02474 1131 SMART LRR_sd22_2 298 330 - -
Tsu05g02474 1131 SMART LRR_sd22_2 586 607 - -
Tsu05g02474 1131 SMART LRR_sd22_2 490 505 - -
Tsu05g02474 1131 SMART LRR_sd22_2 635 660 - -
Tsu05g02474 1131 Gene3D Ribonuclease Inhibitor 153 236 IPR032675 -
Tsu05g02474 1131 SUPERFAMILY L domain-like 383 703 - -
Tsu05g02474 1131 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
Tsu05g02474 1131 SMART LRR_typ_2 418 442 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 153 177 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 490 514 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 658 683 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 586 610 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 538 562 IPR003591 -
Tsu05g02474 1131 SMART LRR_typ_2 298 322 IPR003591 -
Tsu05g02474 1131 Pfam Protein tyrosine and serine/threonine kinase 791 1064 IPR001245 GO:0004672|GO:0006468
Tsu05g02474 1131 SUPERFAMILY Protein kinase-like (PK-like) 765 1066 IPR011009 -
Tsu05g02474 1131 Gene3D Ribonuclease Inhibitor 338 438 IPR032675 -
Tsu05g02474 1131 ProSiteProfiles Protein kinase domain profile. 787 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02474 1131 Gene3D Ribonuclease Inhibitor 439 704 IPR032675 -
Tsu05g02474 1131 Gene3D Ribonuclease Inhibitor 41 152 IPR032675 -
Tsu05g02474 1131 Gene3D Transferase(Phosphotransferase) domain 1 874 1083 - -
Tsu05g02474 1131 SUPERFAMILY L domain-like 49 406 - -
Tsu05g02474 1131 SMART serkin_6 787 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02474 1131 PANTHER RECEPTOR-LIKE PROTEIN KINASE 2 13 1124 - -
Tsu05g02474 1131 Gene3D Phosphorylase Kinase; domain 1 774 873 - -
Tsu05g02474 1131 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 13 1124 - -
Tsu05g02474 1131 PRINTS Leucine-rich repeat signature 490 503 - -
Tsu05g02474 1131 PRINTS Leucine-rich repeat signature 421 434 - -
Tsu05g02474 1131 ProSiteProfiles Leucine-rich repeat profile. 637 659 IPR001611 GO:0005515
Tsu05g02474 1131 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02474 Tsu-Chr5 33389162 33392889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02474 59 1084 Receptor kinase-like Gene Family AT5G56040 49.280 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu05g02474 PK_Tyr_Ser-Thr 3.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02474 - - mtr:MTR_5g045910 1959.88