Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02456 ATGAACCACGAAGAGAAAGTTACTATGGACTTGATTCCAGCTTCTGATCAACATCTTTGTTATGTTCGTTGCAACTTTTGTAACACTGTTCTTGCTGTTGGAATACCATGCAAGAGGCTGCTAGACACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCACTACAAGACCACCAAATTCCAAAACTCAAACTGTTGATCACACCTTAACACTCCAGGGGATTTACAGTAGCAAAAAGGGTCatccatcatcatcttcatcttcttcaccaacTACTTCAACTGACTCATTGTCCCCTAAACCACCACCATTTGTTGTTAAACCTCCTGAGAAGAAGCATCGTCTCCCTTCTGCTTACAACCGTTTCATGAAAGAAGAGATACAGCGCATCAAAGCAGCCAATCCTCAGATCCCACATCGAGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCTAGGTTTGTCCCAAATTCACCAACCAGTTCAATTTCTGCAACTAAAAGGAACCTTGAATGA 525 0.4057 MNHEEKVTMDLIPASDQHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLTTRPPNSKTQTVDHTLTLQGIYSSKKGHPSSSSSSSPTTSTDSLSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPQIPHREAFSAAAKNWARFVPNSPTSSISATKRNLE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02456 174 SUPERFAMILY HMG-box 100 156 IPR036910 -
Tsu05g02456 174 CDD HMGB-UBF_HMG-box 118 154 - -
Tsu05g02456 174 MobiDBLite consensus disorder prediction 77 116 - -
Tsu05g02456 174 Gene3D High mobility group box domain 104 160 IPR036910 -
Tsu05g02456 174 Pfam YABBY protein 16 157 IPR006780 GO:0007275
Tsu05g02456 174 MobiDBLite consensus disorder prediction 77 103 - -
Tsu05g02456 174 PANTHER PROTEIN CRABS CLAW 7 170 - -
Tsu05g02456 174 PANTHER PROTEIN YABBY 6-RELATED 7 170 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02456 Tsu-Chr5 33080417 33082621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02456 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 66.279 4.87e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Tsu05g02456 YABBY 8.7e-55 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02456 K25796 - gmx:100819079 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02456 05 33080417 33082621 Tsu05g02456 05 33080417 33082621 ECH