Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02450 ATGGAATCTTGGAGTTACATCCCAGAAGAGAGAAGTTATTTGTTTTCTGATGAAATGGACTTTTCACTTGATGCTTTTATGAGAAGTAGAAAACCATTGGTTGAATGGGAGAACAAACCTTCATGTAACTTTGAAAGAGATGGATTTAAAGGTATGGAGTTTGTGGACTTGGGATTTCCCGATTTTCTGCAAAAGTCTTTTCATAGTAGCAAGGCTATGGAGACATCTAGGATTGTTCATGGTTCGGTTCAGACATCTAGCTGTGAGCTGGATAGTAATAATTCTAGTAAAAGAGGGAATTCCTCTTCACATGTTATTGCTTTTGATTCATCTTTTGGCGAAGAAGAATCCGAACCAAAGCATTTAAGTTCTTCTCTAGTTGAATTGAAAAATCGTGATTCTTCGTCAATTGATCTGAAGCTAGGGAGATTAGCAGATTTTCAAGGTGCAAGCATTGACAGAGATGCAAAAGAATTCACTTCTGCGGCTATGCGTCAAACTTCGCTAGCTAAGAGATCTCGCACCTCTAGCTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGCAATATGGACCTTAGCTCCTCGAAAGATTACCACAAAAGGCATAGAGTTTGTGATCTTCATTCCAAGACAGCTAAAGTTATTGTGAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAATTCGATGATGGTAAACGTAGTTGTCGCAGACGTCTAGCAGGACACAACGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACTAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGACATATCAAACTTGAAGAGGAGCCAATTTGCAGCCCTCAACTAGAACCAACCGCCACACTTGGTCACGAGTTATCTACTCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCATCACGCCATGCAGCAAAAAATGCATTACCAACTTCTCGTACTTTTCAGGATGTCCGCACACAAGAtagagatgaccaagtttctgAAACGCCTTTGAGGATAACCTCTGTGGATAAACATGAACAAAATGAGTCTTTTCCATGTGGGATAAACTCTAAGGAAGTTATCAAATCTGAAAATGGAGGAGCCACTGTTGATTTGTTTCAACTATCTTCTCATCTTCAAAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAGATGAGGATTGCTCTTTCCCAACAGTGTaa 1284 0.398 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPLVEWENKPSCNFERDGFKGMEFVDLGFPDFLQKSFHSSKAMETSRIVHGSVQTSSCELDSNNSSKRGNSSSHVIAFDSSFGEEESEPKHLSSSLVELKNRDSSSIDLKLGRLADFQGASIDRDAKEFTSAAMRQTSLAKRSRTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHRVCDLHSKTAKVIVNGIEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILQSYQGTNNFSFQDIFQSGHIKLEEEPICSPQLEPTATLGHELSTRALSLLSAQSQNPSRHAAKNALPTSRTFQDVRTQDRDDQVSETPLRITSVDKHEQNESFPCGINSKEVIKSENGGATVDLFQLSSHLQRVEQQRNSVLVKWEDEDCSFPTV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02450 427 ProSiteProfiles Zinc finger SBP-type profile. 182 259 IPR004333 GO:0003677
Tsu05g02450 427 MobiDBLite consensus disorder prediction 83 102 - -
Tsu05g02450 427 SUPERFAMILY SBT domain 183 264 IPR036893 GO:0003677|GO:0005634
Tsu05g02450 427 MobiDBLite consensus disorder prediction 330 357 - -
Tsu05g02450 427 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 311 424 IPR044817 GO:0003677
Tsu05g02450 427 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 45 305 IPR044817 GO:0003677
Tsu05g02450 427 Pfam SBP domain 185 258 IPR004333 GO:0003677
Tsu05g02450 427 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 311 424 - -
Tsu05g02450 427 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 45 305 - -
Tsu05g02450 427 Gene3D - 176 246 IPR036893 GO:0003677|GO:0005634
Tsu05g02450 427 MobiDBLite consensus disorder prediction 330 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02450 Tsu-Chr5 33034110 33038568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02450 137 425 SBP-box Gene Family AT1G69170 41.716 1.73e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu05g02450 SBP 3.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02450 - - mtr:MTR_5g046670 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02450 05 33034110 33038568 Tsu05g02450 05 33034110 33038568 ECH