Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02445 atgGGTAGAGGAAAGGTAGAGCTGAAGagaattgaaaacaaaataaatcgtCAAGTAACATTTGCAAAGAGAAGAAATGGGTTACTCAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATTATTTTCTCCAACCGTGGAAAGCTCTATGAGTTCTGCAGTGGTTCTAGcaTGGCCAAAACACTTGAACGGTATCAAAGATGCAGTTATGGAGCCTTGGAACTACAGCATCAACCTGAAATTGAAACACAGCAGAGGCGTTATCAAGAATATCTCAAGCTAAAATCCAAAGTTGAGGCACTACAACAATCACAAAGACACATTCTTGGAGAAGAATTGGAGAGCTTAGATATTAAGGATCTAGAGCAGCTAGAACGCCAGTTAGACTCTTCTTTAAAGACAATCAGGTCAAACAAGACACAGCATATGCTTGATCAACTCTCAGATTTGCAAAAAAAGGAAGAGATGCTAATGGAAACAAATAATATCCTGAGGAACAAGTTGGAAGATATTAATGAGACCCTTCAACCAACATGGGAATCTAGGGAGCAAAATGCACCCTATAGTTGCCACCCTCACCAATCAGAGGGATACTATGAGAAAGCACCTTGCAATAGTACATTGCAAATTGGCTACGATACTTCAGTGTTAAATAATGAATCAAGAGAAGCTGCAGGAACCTCATCTCACAATGCCAATAACTTTATGCAAGGATGGATGCACTGA 741 0.386 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMAKTLERYQRCSYGALELQHQPEIETQQRRYQEYLKLKSKVEALQQSQRHILGEELESLDIKDLEQLERQLDSSLKTIRSNKTQHMLDQLSDLQKKEEMLMETNNILRNKLEDINETLQPTWESREQNAPYSCHPHQSEGYYEKAPCNSTLQIGYDTSVLNNESREAAGTSSHNANNFMQGWMH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02445 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 Coils Coil 126 146 - -
Tsu05g02445 246 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Tsu05g02445 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tsu05g02445 246 Coils Coil 152 175 - -
Tsu05g02445 246 PANTHER MADS BOX PROTEIN 1 231 - -
Tsu05g02445 246 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g02445 246 MobiDBLite consensus disorder prediction 226 246 - -
Tsu05g02445 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g02445 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 231 - -
Tsu05g02445 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu05g02445 246 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02445 Tsu-Chr5 32920780 32940490 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02445 1 245 MADS-box Gene Family AT5G15800 58.015 2.65e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g02445 K-box 9.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02445 K09264 - gmx:100811049 410.223