Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02441 atggGAAGGAGTAAGGTACAGCTAAAACGGATCGAGAACAAGATCAACCGACAGGTAACTTTCTCAAAAAGGAGAACCGGTTTGCTCAAGAAAGCTAATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTCATAATGGAAAGCTCTTTGAGTATTCAACTGATTCATGCATGGAGCAGATACTGGAACGCCATGAAAGGTATGGCTATGCAGAGAGAGTACTGGTAGAAAATGAAATTGACACTCAGGAAAACTGGACTCATGAATACACTAGACTCAAAGCAAAGATTGATCTTTTGCAGCGAAACCACAGaCACTATATGGGAGAAGATTTAGCTACAATGAGCCTGAAAGAACTTCAATGTCTAGAGCAGCAGCTAGATACCGGTCTCAAAAACATTCGTTCCCGCAGAGTATGTTTACACACTTTTGAATTTCTATACACATACATGGatacctctctctctctctttATTAAGGAGAAGCAGAAGGAGAAGGAAAAAGCCATTGCACAAGAAGTTGCTGTTCAATGGGAGGAGCCAGCCTATAGGGTTGATACTTCTTTCCTACAAGACCCTCTTTCCGGTTTCAACATGGGCGGCAATTATCGTGAGGGAGAACAAGAAATTGGGAGGAACGGGCTTGACTTGACCCTAGAAACACTATATTATTAA 690 0.3986 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSHNGKLFEYSTDSCMEQILERHERYGYAERVLVENEIDTQENWTHEYTRLKAKIDLLQRNHRHYMGEDLATMSLKELQCLEQQLDTGLKNIRSRRVCLHTFEFLYTYMDTSLSLFIKEKQKEKEKAIAQEVAVQWEEPAYRVDTSFLQDPLSGFNMGGNYREGEQEIGRNGLDLTLETLYY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02441 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 Pfam K-box region 83 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g02441 229 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Tsu05g02441 229 Coils Coil 88 108 - -
Tsu05g02441 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 ProSiteProfiles K-box domain profile. 88 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu05g02441 229 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Tsu05g02441 229 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu05g02441 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
Tsu05g02441 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g02441 229 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 209 - -
Tsu05g02441 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02441 Tsu-Chr5 32877597 32897396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02441 1 228 MADS-box Gene Family AT1G26310 53.906 1.69e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g02441 K-box 5.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02441 K09264 - gmx:100819745 297.745