Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02425 ATGGATTCCATGGCTTTGTTGAAAGACGGTATAGGAATTGTTGAATGTGATGTTAAAGTTATTCAAACCACAGAGAAAAAGAAACGCGGTAGAAAGAGTAATGCGGAGAAGAAAGAAGCGTTAAGGAAAATGTTagagaatgatgatgatgatggtaatgttgatgacgtggcagtggcACCTTCTTctggaaagaaaaaaacagacAAGGAAGTTGAAACAGGGGAATgtagtttttcttcttttgatgtTTCTGTCCGAAAGAGTaatgtgaagaagaagaaggaaaatcGTGGTAGGAAGAGAAAGATTATTTTTCATGAAAATGATGCtgtgaaagagaagaagaaagataatcgtgGTAGAAAAAGAAAGATTATTCTTGATAATGTtgtgaagaagaaagataatcgtgGTAGGAAAAAAAAGATTGTTCTTGATGATGTTGTAAAAAAGAAGGATAATCGTGGTAGGAAAAGAAAGATTATTATTTCTAAttctgaagatgatgaacaagaGGAGGAAGAAAATGGTGGTTTTgttaagaaagaaaagaaggaactttatggaagaaagagaaaaatggaTAATAATAGTAAAGGAGGTTATGCTTTAAGGAGTGTTGAAACAATGAAACTTGAAACAAAGATTGATGATCGTGATGTTGTGCTCTCCAAGTATATGATTGAATACCTTCTTCCATATTTAAGACAAATGGATCTACAACAAATGGATGAGAAAGATATAGAAGCCAACATACTAGGCATCTCAGTCTCCGAGATAAACATTAAAGTAGCAGATTGCTCTAAAGATGAGATCGCTTACTGTGACAACTGCAACACGTCAATATTTGACTGCCACAGAAGCTGTACAAAATGCTCGTTTGACCTTTGTCTCGACTGTTGTTGGGAGCTTCGGCATGCAAAAAGTGATGGCAGCATTGCCTGTCCGAAAGCCAATAACGAATTTGATCATGGTTTCCTTGAGCTGAAAAGCTTTCTTCCGCCAAATTGCATCTCTGAGTTAGTATGTAAGGCGCAAGGACTGAAAGAAACAATGAAACTTAAAGATGCAGAGGAGACTCTTGATAATAATTGCTCTTGTTTGAACCCTGTTAGGAACAATGCAGATGATATACCCGATAACAAAAAGAAGGCAGCTTTTCGTGAAGATTCCagtgacaattttttatactgTCCTAGGGCTGTAGATCTACATAATCCTGAGAACGATTTAAGACATTTTCAATGGCACTGGAGAAAAGGGGAGCCTGTAATTGTCAGCAATGTTCTTGAATCATGTACTTCTGGTTTAAGCTGGGATCCACTTGTCATGTGGCGTGCATTTCATCAGATAAGTGATACCGATCACAAGTCACTTTTGGATGTTAAGGCAATAGATTGTTTAGATTGGTGCCAGGAAAGTTTTAATGTGCACCATTTCTTTACTGGGTACACAAATGGTCGTAAGGGTCAGTTTGATTGGCCTCAGgtattgaaattgaaagattGGCCCCTTAATTTATCTGAGGAACTATTGCCTCATCATTGTGCCGAGTTCCTATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGTGCTCTTAACCTTGCTGCGAAGCTGCCCGATAATGTTGACATGCGTCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGTTGTAAATGTGTTGACTCATATTGCTAAAGTGGAATTGGAAACTGCAAGCATTACTGCaataaagaaattgaaacaaaagCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCAGGATGGAGATACCAATGTGGACATGCTTGATGATTCATCTTCTTCCGTAACTTCTTCAGACGAGCAAAACAGTTTAGATGGTGCTCTCTGGGATATTTTTCGGCGAGAGGATGTACCTAAATTGAAGGAATATCTGAACAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAAAACAGGTAATTCACCCCATCCATGATCAGACCTTTTATCTCACTATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCATGGACTTTTGTTCAGAAGCTAGGAGACGCTGTTTTCATTCCTGCTGGTTGTCCCCACCAAGTTAGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAACGTTGGTGAGTGCGTCCGTTTGACGGAGGAAATCCGCAAACTTCCGGTAAACCACAGTTCCGCAGAGGACAATTTGGAGgtgaagaaaatgattataCATGCTATGCTTGATGTGGTCAAAAAGTTGGACAAAGAAAGGTTAGTTGTTTTTCAATACAAGTGGGAGTTGAAAGTGAGCAACGCTACTGCACAGGGAAATAGTGTGCTGCATTTTCCAAAGTTAGTCAGTAATGGATGTTCGCTCCGTCAGGGTCAACAAATTCATGTAGTTTGTGATAAGACTAAAGAAACAACCTGCTGTGATGTTATGAAGAATCAGTGTCGCAAAAAATCACCTCAATACCATATAGGCCGTGGATGGTATGATTTTGTTAGAAAGCTGAAACTGAAAAAGAGCAATAAGATTGTGTTTACTCTCGACAGTCCTCCACTAGTCTTGAATGTCAGGGCAGTGAGATGTACCAGAAGTTGA 2715 0.3551 MDSMALLKDGIGIVECDVKVIQTTEKKKRGRKSNAEKKEALRKMLENDDDDGNVDDVAVAPSSGKKKTDKEVETGECSFSSFDVSVRKSNVKKKKENRGRKRKIIFHENDAVKEKKKDNRGRKRKIILDNVVKKKDNRGRKKKIVLDDVVKKKDNRGRKRKIIISNSEDDEQEEEENGGFVKKEKKELYGRKRKMDNNSKGGYALRSVETMKLETKIDDRDVVLSKYMIEYLLPYLRQMDLQQMDEKDIEANILGISVSEINIKVADCSKDEIAYCDNCNTSIFDCHRSCTKCSFDLCLDCCWELRHAKSDGSIACPKANNEFDHGFLELKSFLPPNCISELVCKAQGLKETMKLKDAEETLDNNCSCLNPVRNNADDIPDNKKKAAFREDSSDNFLYCPRAVDLHNPENDLRHFQWHWRKGEPVIVSNVLESCTSGLSWDPLVMWRAFHQISDTDHKSLLDVKAIDCLDWCQESFNVHHFFTGYTNGRKGQFDWPQVLKLKDWPLNLSEELLPHHCAEFLSSLPYKEYTDPFKGALNLAAKLPDNVDMRPKTYIAYGFAQELGRGDSVTKLHCDMSDVVNVLTHIAKVELETASITAIKKLKQKHLEQDKRELHGDNQDGDTNVDMLDDSSSSVTSSDEQNSLDGALWDIFRREDVPKLKEYLNKHFREFRHVHCSPLKQVIHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECVRLTEEIRKLPVNHSSAEDNLEVKKMIIHAMLDVVKKLDKERLVVFQYKWELKVSNATAQGNSVLHFPKLVSNGCSLRQGQQIHVVCDKTKETTCCDVMKNQCRKKSPQYHIGRGWYDFVRKLKLKKSNKIVFTLDSPPLVLNVRAVRCTRS 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02425 904 MobiDBLite consensus disorder prediction 23 73 - -
Tsu05g02425 904 MobiDBLite consensus disorder prediction 609 641 - -
Tsu05g02425 904 MobiDBLite consensus disorder prediction 88 121 - -
Tsu05g02425 904 SMART cupin_9 513 760 IPR003347 -
Tsu05g02425 904 MobiDBLite consensus disorder prediction 23 49 - -
Tsu05g02425 904 Gene3D - 792 902 IPR015300 -
Tsu05g02425 904 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 792 IPR045109 GO:0032454|GO:0033169
Tsu05g02425 904 SUPERFAMILY Clavaminate synthase-like 406 783 - -
Tsu05g02425 904 SUPERFAMILY DNA-binding pseudobarrel domain 840 890 IPR015300 -
Tsu05g02425 904 MobiDBLite consensus disorder prediction 625 641 - -
Tsu05g02425 904 ProSiteProfiles JmjC domain profile. 520 760 IPR003347 -
Tsu05g02425 904 MobiDBLite consensus disorder prediction 102 121 - -
Tsu05g02425 904 Pfam JmjC domain, hydroxylase 638 743 IPR003347 -
Tsu05g02425 904 Gene3D Cupin 397 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02425 Tsu-Chr5 32496369 32502790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu05g02425 JmjC 1.2e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02425 K15601 - mnt:21404458 632.869