Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02400 ATGAAAGCAGGGAAATTGAACCATGATGAAGATGAGTACGATGATGAAGATtttaattcttccaaaaaacaAGGCACTTCCTCTGCTCCTAACACCAACAAAGATGGAAAAGCTACTGATAAGGCTAGTGTAATAAGATCGAAACATTCTGTTACCGAGCAGCGAAGAAGAAGCAAAATAAATGAGAGATTCCAAATATTGAGGGATTTAATACCTCAATGTGATCAAAAGAGGGACACGGCATCATTCTTATTGGAGGTTATTGAGTATGTTCGGTACTTACAGGAGAAGGTACAAAAATATGAAGGCCCGTATCAAGGTTGGAGTCAAGAGCCGTCGAAGTTGATGCCTTGGAGAAATAGCCATTGGCGTGTCCAAAACTTCGTTGGTCAACCTCCAGTTGTAAAGAATGGTTCAGGTCCGGCATCACCATTTCCCGGAAAGTTTGACGAAAGCAATGTTAGTATCTCTCCAACTATGCTTAGTGGCACTCAGAGTATGATAGATCATGATCTGAGTCGGGATATTATCGGCAAAACAATGGAGAGGCAACCCGATTTAGCAAGCAAGGGAATTCCTCTGCCCATGGCTATGCATTCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGCACTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCACAATCAATAGAATGTCCCGCAACTAGTGAACAACTGAACCAGCAGGATGAACTGACGGTTGAAGGAGGGACAATCAGCATCTCGAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAAGCGCTACAGAGTGCTGGGTTAGATCTGTCGAAGGCTAACATTTCAGTTCAAATTGATCTCGGGAAGCGTGCAAACAAAGAGCCAGGTGGCACCTCTTCTCCGAAGGATCATGATAACCCTCTTtctagcaatcaatcaattgcACATTTTAGAGATGCTATGATTAGAGAGAATTCAGATCAAGCTcaaaaaagaatgaaaacatACAAGTGA 1005 0.41 MKAGKLNHDEDEYDDEDFNSSKKQGTSSAPNTNKDGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVRYLQEKVQKYEGPYQGWSQEPSKLMPWRNSHWRVQNFVGQPPVVKNGSGPASPFPGKFDESNVSISPTMLSGTQSMIDHDLSRDIIGKTMERQPDLASKGIPLPMAMHSNMSVPVRSDGALSHPLQGTVSDAQSIECPATSEQLNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRANKEPGGTSSPKDHDNPLSSNQSIAHFRDAMIRENSDQAQKRMKTYK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02400 334 MobiDBLite consensus disorder prediction 39 57 - -
Tsu05g02400 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 116 IPR036638 GO:0046983
Tsu05g02400 334 MobiDBLite consensus disorder prediction 1 57 - -
Tsu05g02400 334 SMART finulus 50 100 IPR011598 GO:0046983
Tsu05g02400 334 PANTHER TRANSCRIPTION FACTOR BIM2 1 332 - -
Tsu05g02400 334 Gene3D - 40 115 IPR036638 GO:0046983
Tsu05g02400 334 MobiDBLite consensus disorder prediction 299 313 - -
Tsu05g02400 334 CDD bHLH_AtBIM_like 43 119 - -
Tsu05g02400 334 Pfam Helix-loop-helix DNA-binding domain 46 95 IPR011598 GO:0046983
Tsu05g02400 334 MobiDBLite consensus disorder prediction 286 334 - -
Tsu05g02400 334 MobiDBLite consensus disorder prediction 22 38 - -
Tsu05g02400 334 MobiDBLite consensus disorder prediction 317 334 - -
Tsu05g02400 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Tsu05g02400 334 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02400 Tsu-Chr5 32019035 32025628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02400 1 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 55.090 3.79e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g02400 HLH 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02400 - - gmx:100816055 543.502