Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02392 atggtTTCAAAAACAAGAATCACTATCATTAATGTTACTATCATAGTAACATTATTCACAGCCAATGTTGTATTATCAGATGACACAATTCCAGCTGATAGAGCACAATTAGAAACATGGTTCAGTACCACTATTGGTCCATTAGAACAAAGAAAAGCTACCCTTGACCCTGCATTGGTGACTGCAGAAGCTACTCCTAAAATTATTAAAGTAAATCAAGATGGTAGTGGTGAATTCAAAACCATCACTGATGCTCTTAATAGTGTACCTGCTAGTAACACTCAACGTGTGATTCTTAACATTGGTCCTGGAAATTACAACGAAAAAATCAAAGTTGAGAGAACAAAGCCGTTTGTTACATTTTATGGTTCACCAGATAATATGCCAAATATAACCTATGGTGGTACTGCAGCACAATATGGCACAGTTGATAGTGCTACGGTGATTGTCGAAGGAGATTATTTTGTAGCTGCTAACGTTATAATATCGAATTCTGCACCGCTACCTGACGGAAAAAGGCCAGGTGCCCAAGCTGTTGCATTGAGAGCTTCTGGTGACAAATCAACATTTTATAATTGTCAATTCATTGGGTTCCAGGACACAATTTGTGATGATAGGCATAATCACTTTTTCAAAGATTGTTTAATTCAAGGCACAGTGGATTACATATTTGGAAGTGGAAGGTCACTATATTTGAAAAATGAATTGAGAACCCTTGGTGACACCGGGCCAACAGTGATAGTGGCACAAGCAAGAAAAAGTCCAGATGAAGATACTTTATACTCATTTGTGCATTGTGATGTCACTGGAACTGGACATGATACATTCTTAGCCAGAGCATGGATGTCTAGTCCAGAAGTTGTTTTTGCTTTCACAAATATTAATGATGTTATTAATCCATTGGCTTGGAATAACAACTTGCACCCTGAATATGACAAAACTATTCACTTCGGAGAATACCAGAACACAGGACCAGGTGCAGATACTAAAGGGCGTGCACCTATGATGAAACAACTAACTGCAGAAGAGGTTAAACCATACATTACGCTTGAAGCGATTCAAGCAAGTAAATGGCTTCTTCCTCCTCCAAAAATCTAA 1098 0.3789 MVSKTRITIINVTIIVTLFTANVVLSDDTIPADRAQLETWFSTTIGPLEQRKATLDPALVTAEATPKIIKVNQDGSGEFKTITDALNSVPASNTQRVILNIGPGNYNEKIKVERTKPFVTFYGSPDNMPNITYGGTAAQYGTVDSATVIVEGDYFVAANVIISNSAPLPDGKRPGAQAVALRASGDKSTFYNCQFIGFQDTICDDRHNHFFKDCLIQGTVDYIFGSGRSLYLKNELRTLGDTGPTVIVAQARKSPDEDTLYSFVHCDVTGTGHDTFLARAWMSSPEVVFAFTNINDVINPLAWNNNLHPEYDKTIHFGEYQNTGPGADTKGRAPMMKQLTAEEVKPYITLEAIQASKWLLPPPKI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02392 365 Gene3D - 63 361 IPR012334 -
Tsu05g02392 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 360 - -
Tsu05g02392 365 PANTHER PECTINESTERASE 63-RELATED 34 360 - -
Tsu05g02392 365 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Tsu05g02392 365 Pfam Pectinesterase 70 347 IPR000070 GO:0030599|GO:0042545
Tsu05g02392 365 SUPERFAMILY Pectin lyase-like 64 359 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02392 Tsu-Chr5 31980632 31982538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02392 11 365 Carbohydrate Esterase AT1G69940 53.611 5.50e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02392 K01051 - gmx:100786427 541.962