Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02374 ATGGGTTTTTTACAGAATGTACAAGGGGTTTTTCCTCAGAGTTTATCTCAGTTTCCAACTGATTCAGGATTTATTGAAAGGGCTGCGAGGTTCTCGTGTTTCGGTGGAGGGAATTTCGGTGATGTTGTGAACTCGTACGTGATTCCTCAATCTATGGCTATGTATGCCGGCACAATTCATGGAGCTAGAGATGGTCTTGCAGGCATTGGATTGAAAGTTGGAATTGGAGGACAGTCTCAAGAAAGTGATGATCCTAAGGTAGTTGAAGGTACAAAAGGCGTGCCTCCGTCGGTTGAGCAATTGGCTACTAGAGGAAGCCCTTTAAAGAATGATAAAAATGAGGGTCGTGCCGTGTCTCAAGATGACGGGAAGCAAGCTCTTGTTAGGAATGTTAATGATTCTGACAGAGGTGAATCGGGTGATGACGATGTTCGTGGTGATGGACAGGAAGGTTCCCCTATGTTGGAGGGTACAACAAGCGGAGAACCTTCTATTAAAGGACTAAACtcgaagaaaaggaaaagaagtgGACAAGATGCTGATAATGATAAAGCTGATGGAGCTCGAGAATTACAAAGTGAAGGTGCAAAGGACAATCCCGAGAATCAACAGAAAGGAGACCAAACCAAGGCTTCTGGAAAGAATGCCAAACAGGGCTCTCAAACTTCTGATCCAGCTAAGGAAGAATACATACATGTTAGGGCTCGACGGGGCCAAGCAACAAACAGTCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAGATAAGTGAGAGAATGAAGTTTCTTCAAGAACTTGTTCCTGGATGCAGCAAGGTCACCGGCAAGGCAGTGATGCTGGATGAAATCATCAATTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTGTCTATGAAACTTGCAACGGTAAATCCACGGCTGGATTTTAGTATTGAAGGCCTTCTTACGAAAGATATTCTTCACCAACGGCCTGGTCCCTCATCCACACTAGGGTTTCCTCTAGAAATGCCTATGAATTTTCCACCTTTACATCCATCTCAACCAGGGATGATTCAGTCAGTTATTCCAAACATGCCAAACCCGTCTGATATCCTTCGAAGAACTATTCATCCACAGTTAACACCCTTGACTGGAGGATTCAAGGAGCCAAGTCAGATTCCTGATGTATGGGAGGACGAGCTTCATAATGTTGTACATATGAGCTTTGCAACAACTGCTCCCTCGAGTAGCCAAGATGTGGATGGTACTGCAGCAGCAAATCAGATGAAAGTTGAACTTTGA 1281 0.4387 MGFLQNVQGVFPQSLSQFPTDSGFIERAARFSCFGGGNFGDVVNSYVIPQSMAMYAGTIHGARDGLAGIGLKVGIGGQSQESDDPKVVEGTKGVPPSVEQLATRGSPLKNDKNEGRAVSQDDGKQALVRNVNDSDRGESGDDDVRGDGQEGSPMLEGTTSGEPSIKGLNSKKRKRSGQDADNDKADGARELQSEGAKDNPENQQKGDQTKASGKNAKQGSQTSDPAKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFSIEGLLTKDILHQRPGPSSTLGFPLEMPMNFPPLHPSQPGMIQSVIPNMPNPSDILRRTIHPQLTPLTGGFKEPSQIPDVWEDELHNVVHMSFATTAPSSSQDVDGTAAANQMKVEL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02374 426 CDD bHLH_AtBPE_like 229 314 - -
Tsu05g02374 426 Pfam Helix-loop-helix DNA-binding domain 242 290 IPR011598 GO:0046983
Tsu05g02374 426 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 425 IPR024097 GO:0006355
Tsu05g02374 426 SMART finulus 245 295 IPR011598 GO:0046983
Tsu05g02374 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
Tsu05g02374 426 MobiDBLite consensus disorder prediction 128 149 - -
Tsu05g02374 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 308 IPR036638 GO:0046983
Tsu05g02374 426 MobiDBLite consensus disorder prediction 205 225 - -
Tsu05g02374 426 MobiDBLite consensus disorder prediction 77 227 - -
Tsu05g02374 426 PANTHER BHLH TRANSCRIPTION FACTOR 3 425 - -
Tsu05g02374 426 Gene3D - 236 309 IPR036638 GO:0046983
Tsu05g02374 426 MobiDBLite consensus disorder prediction 167 204 - -
Tsu05g02374 426 MobiDBLite consensus disorder prediction 406 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02374 Tsu-Chr5 31574553 31578456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02374 3 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 45.517 1.13e-95 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g02374 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02374 - - gmx:100797720 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02374 05 31574553 31578456 Tsu05g02374 05 31574553 31578456 ECH