Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02342 ATGGATTTCGATATGGTTGCCGTGTTACGCAAGGCGAATGTAATCAAGGCAAGGTTAGAGGCTCTTCAGAAATCCAACATTGCGAATCGAAGCATATCAGAATGCTACAAAGAAGGAAGTCCTATTGATAGAACAAGAGTTTCTGTCACTAATGGTTTGAAGGTCAAGCTTAGAGACATGATGAATGATTTTCAGTACTTAAGGGATAAGATTGTGTTGGAATTTGCATTGTTCGGTTTGAAAAATGGAGGCAACTTGTTATGGAAGATCAAATTCTAG 279 0.3835 MDFDMVAVLRKANVIKARLEALQKSNIANRSISECYKEGSPIDRTRVSVTNGLKVKLRDMMNDFQYLRDKIVLEFALFGLKNGGNLLWKIKF 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02342 92 Pfam Syntaxin 1 71 IPR006011 GO:0016020
Tsu05g02342 92 Gene3D - 1 74 - -
Tsu05g02342 92 PANTHER SYNTAXIN 1 74 IPR045242 -
Tsu05g02342 92 PANTHER SYNTAXIN-112 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02342 Tsu-Chr5 31003597 31003875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02342 1 75 SNARE and Associated Proteins AT2G18260 46.667 4.75e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02342 K08486 - gmx:100779708 113.62