Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02331 ATGGAAGCTCGTCTCAAAATCTTCAACCCTTCACTTTTTCGTCGCCAATTAACCCCTAAAACCAAAACCACACCACCCTTTTTCCCTCTTCCCAAAATCTCTCCAACTCGAGCTTTTTCTTCTCATTCGCCAATTCCTCCAAATTCAGATCCTCATTCTCATAGATTCTTCTCTTCACTCACATCTTCTCAAAATCTCAACTTTTCAAACCCCAATAAAAATCTCAACAACCCATTTACCTCAAAATTACAATCTAGCAATATTGTTTGGAACCCACCTTCAGAAAATGGAAATCAGGGTTTTTGCATTGGCAACAATAAAAACTGTGTTGTTACGGTGGTTTTATTGGGGTGGCTTGGAGCAAAAACTAGACACCTGAGAAGATATGCTGAATGGTATAATTCACGTGGTTTTCATGCTGTTACTTTTGTTGTTGATGTAAAAGAGATTCTTGGATTTGACCTTGGTGTTGTACTTGAGGAAAGAATTTCTGAATTTGCTGACCAATTAGTTTCATGGGTTTCTTGTGAGGAAAATGATGGAAGAGAAAGGTGTTTGATTTTTCATACTTTTAGTAACACTGGTTGGTTTGTgtaTGGTTCTATTCTTGCTAGATTTATGGATAGTTATGATGTTATGGAGAAGATTAAAGGATGCATTGTTGATTCTGGTGGAGCAGAACCTTTTAATCCTCAGGTCTGGGCTGCTGGTTTTGCTACTGCTATATTGCAAAAACGCAGCTCTTCAGCCCAAGCTTTAGTTGACGTAGGAAACAAGGTTAAATCAGAGACAAAGATTCAACAAAATGAACCTTCCATAATTGAAATTGTGGTGTTGTCACTTTTAGATAAGATATTCTCATTTCTTTTGCAGTTGCCGGAGTCAAAACAGAGGTTAAGGAAGGTTTTCAATCCCCTTGCGGAACACCAGCCTTGTCCTCAGCTATACTTGTACAGTACAGCTGACAAAGTAATCCCGTTTCAATCGATAGAAGCGTTCATTGAGGAACAGCGGAAGATGGGAAAAAATGTGAGATCATATAACTTTGGTTCATCTCCCCATGTGGATCATTATAGGAGTTTTCCGGACGTATATCTTTTGCAAGTTGCCGAATTCTTGAACGATTGTTTTGATACAGAAAAACAGACCAAACATGCATCGGTTAAGATCCATCCTTATTTCACTGCTCGATACTCAGTCAGACATTGTGCATACAAGCGGTCGCAGCAAGATTCCAATCCAGCAAATATGAAGATCATCGCCGCTTATTTGCTAGCTGTTTTGGGCGGTAACGCATCCCCTTCTGCTGCTGACATAAAAAACATCCTTGGTTCAGTTGGAGTGGAGGGTGAGGACTCAAATATTGAGTTGCTCTTGAGCGAAGTCAAGGGGAAAGATTTTGCTGAGCTTATTGCAAGTGGAAGAGAAAAGTTGGCTTCCGTTCCATCTGGTGGTGGTGCAGTTGCTGTTTCTGCTGCAGCTGGTGGAGGTGCTGGAGCTGCTGCCGCACCTGCTGCTGAAGCAAAGGAGGAAAAGAAGGttgaagaaaaggaagagtCCGATGATGACATGGGCTTCAGCTTGTTTGACTAA 1593 0.4062 MEARLKIFNPSLFRRQLTPKTKTTPPFFPLPKISPTRAFSSHSPIPPNSDPHSHRFFSSLTSSQNLNFSNPNKNLNNPFTSKLQSSNIVWNPPSENGNQGFCIGNNKNCVVTVVLLGWLGAKTRHLRRYAEWYNSRGFHAVTFVVDVKEILGFDLGVVLEERISEFADQLVSWVSCEENDGRERCLIFHTFSNTGWFVYGSILARFMDSYDVMEKIKGCIVDSGGAEPFNPQVWAAGFATAILQKRSSSAQALVDVGNKVKSETKIQQNEPSIIEIVVLSLLDKIFSFLLQLPESKQRLRKVFNPLAEHQPCPQLYLYSTADKVIPFQSIEAFIEEQRKMGKNVRSYNFGSSPHVDHYRSFPDVYLLQVAEFLNDCFDTEKQTKHASVKIHPYFTARYSVRHCAYKRSQQDSNPANMKIIAAYLLAVLGGNASPSAADIKNILGSVGVEGEDSNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAAAGGGAGAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02331 530 Gene3D - 416 474 IPR038716 -
Tsu05g02331 530 Pfam Eukaryotic protein of unknown function (DUF829) 112 373 IPR008547 -
Tsu05g02331 530 MobiDBLite consensus disorder prediction 501 530 - -
Tsu05g02331 530 Pfam 60s Acidic ribosomal protein 433 529 - -
Tsu05g02331 530 CDD Ribosomal_P2 417 530 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tsu05g02331 530 Gene3D alpha/beta hydrolase 104 364 IPR029058 -
Tsu05g02331 530 MobiDBLite consensus disorder prediction 506 520 - -
Tsu05g02331 530 Hamap 50S ribosomal protein L12 [rpl12]. 418 530 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tsu05g02331 530 PANTHER UNCHARACTERIZED 37 382 IPR008547 -
Tsu05g02331 530 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 37 382 - -
Tsu05g02331 530 SUPERFAMILY alpha/beta-Hydrolases 112 380 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02331 Tsu-Chr5 30861083 30865679 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02331 417 486 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 81.429 1.45e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02331 - - mtr:MTR_5g020710 622.468