Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02296 ATGAGGAGGCAGTTACATCTAACCAAGATATATTCATTCGCGTGTGGGAGACCATCGTTGAAAGGCAGAGAACATTCACAATTTGGAGAGTGTGGATATTCAAGGGTGGTGTTCTGCAATGAACCAgagagctttgaagaaggaattaAAAAGTATGCAGATAATTCAATTAGGTCTACAAAATATACTATTGCTACATTTTTGCCTAAGTCATTGTTTGAACAGTTTAGGAGAGTGgctaatttctattttttggtaATTGGTTCTTTGGCCTTCACAAATCTTGCTCCTTATACATCTGTTAGTGCCATCCTTCCTTTAGTTATTGTTATTGGTGCTACTATGGTCAAAGAGGGTATTGAAGATTGGCATCGCAAAAAACAGGATATTGAGGTGAACAATAGAAGAGTTAGAGTGCATAAAGGGCATGGAACATTTGAATATACTGAGTGGGAGAATTTGAAGGTGGGGCATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCAGACCTTGTACTTATTTCATCAAGTTATGAAGATGCAATTTGTTATGTTGAGACAATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGATTGGGTGTAACTGTTTCTTTTCATGAAGACTTTGACTTCAGTGATTTTAGAGCTTCAATCAAATGTGAAGATCCAAAtgcaaatttatattcatttgtTGGTAGTATGGAGTTTAAAGATCAACAGTATCCCTTATCTCCTCAACAACTTCTTCTTAGAGACTCTAAACTTCGTAATACAGACTACATATTTGGTGTTGTTGTCTTCACTGGTCATGACACAAAGGTCATCCAAAATTCCATGGACCCCCCTTCAAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATTATCTActtattgttttgtattttattttttatggcaGCTATTGGATCTGTTTTCTTTGGAATTACAACTAGAGAAGACTTTGATGACGACGGTGTAATGAAAAGATGGTATATAAGACCAGACAATTCTACAATTTTCTTTGATCCAAAAAGAGCTTATATTGCTGATATGTTTCATTTTTTGACAGTCTTAATGTTATATGGCTTCTTCATTCCAATCTCATTGTATGTTTCAATAGAAATTGTCAAAGTTCTGCAAAGCATCTTCATCAATCAAGATATACATATGTACTATGCCGAAGCAGATAAAGCGGCCTATGCCCGTACTTCAAACTTGAATGAAGAACTTGGACAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTCACTTGCAACTCAATGGAGTTTCTTAAATGCTCCATTGCTGGAGTAGCTTATGGTCGTGGTGTTACAGAGGTCGAGAGGGTCATGAATAGAAGAAATGATTCTCCTTTGATTAACAACATCAAGGATTCTCCCATTATAAATGAACTTTTACCCATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTGAATGAGCCTTATGCAAATATTATCCAGAAGTTTTTTCGCTTGTTGGCAATCTGTCATACAGCCATACCAGAAGTGGATGATGATACAGGAAATGTCTTGTATGAGGCCGAATCTCCAGATGAAGCAACATTTGTGATTGCAGCGAGAGAATTTGGTTTTGAATTCTATAAAAGGACTCAAACCAGTTTATCGATGTATGAAATGGATCCAGTTTCTGGTGAAAAAGTCGAAAGGATTTACACACTTTTGAATGTGTTAGAATTTAATAGCACAAGGAAGCGAATGTCGGTGATAGTTAAAGATGAAGAAGGGagaattttgttgttttgtaaaGGTGCAGACATTGTCATGTTTGAGAGACTTGCCAAGGATGGGAGGGAATATGAAGAGAAAACCTTGGAAGATGTGCATGAATATGCTGACGCAGGTCTAAGGACATTGATATTGGCTTACCGTGAACTTGACGAAGAACAATACAAGGAGTTTGATAATGAATTTTCCCAAGCAAAAATCTCAGTTACTGCAGATCGGGAAACCTTGATAGATGAGTTATCAGATAAGATTGAGAGTGATCTAATCCTTCTTGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAACTTGCACAAGCAGGAATTAAGATATGGGTTCTCACTGGTGATAAAATGGAGACTGCCATCAATATTGGTTTTGCATGTAGTTTGCTTAGACAAGGAATGAAGCAACTTATAATTCAATTGGAGAGTCCAGAAATTAAAGCATTGGAGAAGGCTGAAGACAAAAGTGTTGTTGAAAAGGCTTTAAGGGAAAATATCCGACATCAGATATCTGAAGGTGCTCAACAACTTGTCGCCTCTAGAGGAACCTATGAGGAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCTTTAGAGGATAACACAAAGGACATGTTTCTAGATCTTGCAATTCGATGTGCATCTGTTATCTGTTGTCGATCATCTCCAAAGCAGAAAGCGCTAGTTACTAAACTTGTCAAATCTGGAACTGGTAAAACAACGTTAGCTATTGGCGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGTTGGCATAAGTGGCGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATCGCACAGTTCCGTTATTTAGAAAGATTACTTCTTGTACATGGACATTGGTGTTATCGGAGGATCTCATCAATGATATGTTACTTTTTCTACAAGAATATCACTTTTGGATTTACTGTTTTCTTGTATGAAGTGTGTGCATCATTCTCTGGACAACCTGCATACAATGACTGGTTTTTGTCTCTATATAATgtctttttttcatcacttcCTGTGATTGCCCTTGGAGTCTTTGACCAAGATGTATCTGCTCGGTATTGTTTGAAATTTCCTATATTATATCAAGAAGGTGTTCAAAATGTCCTATTTAACTGGGCAAGTATACTAAGTTGGATGCTTAACGGCTTTATTAGTGCCATAATGATATTCTTCTTTTGCACAAATGCAATGGAAATTCAAGCCTTTGATAAGGAAGGTAGAACTGCCGAGAGGGATATACTTGGAGCAACTATGTACACATGTGTGGTTTGGGTTGTGAACTTGCAAATGGCACTTGCCATAAGTTACTTCACCTTGATTCAACATGTTTTCATATGGGGAACCATTGCATTATGGTACCTTTTCCTCATAGTTTACGGCGCGATCCCTCCTGGAATTTCCACAACTGCTTACAAAGTCTTCATTGAAACTCTAGCACCATCTCCTTCTTATTGGATTTTGACATTGTTTGTGGTCATCTCAACACTCATACCATACTTCTCTTACTCAACAATCAAGATGcggttttttcctttttatcatGAGATTGTGCAATGGATAAGGTATGAAGGGAAGACGAATGATCCTGAATTCTGCCATATGGTGCGCCAACGATCCTTGCGCCCAACCACTGTCGGTTCAACAGCCCGCTTAGCAGCTAAGACTAACAGTGTTAGAGAGAATTCTActaaccaaaaataa 3573 0.3644 MRRQLHLTKIYSFACGRPSLKGREHSQFGECGYSRVVFCNEPESFEEGIKKYADNSIRSTKYTIATFLPKSLFEQFRRVANFYFLVIGSLAFTNLAPYTSVSAILPLVIVIGATMVKEGIEDWHRKKQDIEVNNRRVRVHKGHGTFEYTEWENLKVGHIVKIMKDEFFPADLVLISSSYEDAICYVETMNLDGETNLKLKQGLGVTVSFHEDFDFSDFRASIKCEDPNANLYSFVGSMEFKDQQYPLSPQQLLLRDSKLRNTDYIFGVVVFTGHDTKVIQNSMDPPSKRSKVEKKMDKIIYLLFCILFFMAAIGSVFFGITTREDFDDDGVMKRWYIRPDNSTIFFDPKRAYIADMFHFLTVLMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYAEADKAAYARTSNLNEELGQVDTILSDKTGTLTCNSMEFLKCSIAGVAYGRGVTEVERVMNRRNDSPLINNIKDSPIINELLPIKGFNFTDERIMNGNWVNEPYANIIQKFFRLLAICHTAIPEVDDDTGNVLYEAESPDEATFVIAAREFGFEFYKRTQTSLSMYEMDPVSGEKVERIYTLLNVLEFNSTRKRMSVIVKDEEGRILLFCKGADIVMFERLAKDGREYEEKTLEDVHEYADAGLRTLILAYRELDEEQYKEFDNEFSQAKISVTADRETLIDELSDKIESDLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQLIIQLESPEIKALEKAEDKSVVEKALRENIRHQISEGAQQLVASRGTYEEAFALIIDGKSLAYALEDNTKDMFLDLAIRCASVICCRSSPKQKALVTKLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTVFLYEVCASFSGQPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLKFPILYQEGVQNVLFNWASILSWMLNGFISAIMIFFFCTNAMEIQAFDKEGRTAERDILGATMYTCVVWVVNLQMALAISYFTLIQHVFIWGTIALWYLFLIVYGAIPPGISTTAYKVFIETLAPSPSYWILTLFVVISTLIPYFSYSTIKMRFFPFYHEIVQWIRYEGKTNDPEFCHMVRQRSLRPTTVGSTARLAAKTNSVRENSTNQK 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02296 1190 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Tsu05g02296 1190 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 828 939 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g02296 1190 Pfam Phospholipid-translocating ATPase N-terminal 37 103 IPR032631 -
Tsu05g02296 1190 Pfam Cation transport ATPase (P-type) 533 617 - -
Tsu05g02296 1190 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 694 IPR023299 GO:0000166
Tsu05g02296 1190 Gene3D - 544 667 IPR023299 GO:0000166
Tsu05g02296 1190 SFLD p-type atpase 404 908 IPR044492 -
Tsu05g02296 1190 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 2 1184 - -
Tsu05g02296 1190 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Tsu05g02296 1190 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Tsu05g02296 1190 Pfam Phospholipid-translocating P-type ATPase C-terminal 885 1135 IPR032630 -
Tsu05g02296 1190 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 1184 - -
Tsu05g02296 1190 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1135 IPR023298 -
Tsu05g02296 1190 SUPERFAMILY HAD-like 410 901 IPR036412 -
Tsu05g02296 1190 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 52 1142 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu05g02296 1190 Gene3D - 114 282 - -
Tsu05g02296 1190 SFLD Haloacid Dehalogenase 404 908 - -
Tsu05g02296 1190 CDD P-type_ATPase_APLT_Dnf-like 54 1017 - -
Tsu05g02296 1190 Gene3D - 688 897 IPR023214 -
Tsu05g02296 1190 SUPERFAMILY Calcium ATPase, transduction domain A 137 279 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02296 Tsu-Chr5 30064330 30069802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02296 5 1183 Primary Pumps ATPases AT1G68710 71.970 0.0 1835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02296 K01530 - gmx:100811892 2015.35