LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02286	ATGAAAAGATCTGTGATAAGATTTAGAACAGGATCATGGAATGGCCGTGCTTTTACCGGATATCCAATACAACCGttgaaacaacaacaaaaatttgagTTTGTTATGACTGACAAAGAAGTGTATCATCGATACGAAATCATTGATAAATCATTGATTTGTGTGTATAGACTGACACTTTCAGGGAATTTGGAAGCTTTAGTTTGGACAAATCACACAAACAGGTTAATGATCTACAACGGCGTACAAGATGCGTGTGATAGTTATGCTTTTTGTGGTGCTAATTCGGTATGCAGTATGGATGGTAACATCGCTAAATGTGAATGTTTGAAGGGTTATGTTCCTAAGAATCCTGATCAATGGAATATATCATATTGGTCTAGTGGTTGTTTTCCAAAAATGAAATCAATTTGTGGAAATAATAACACAAGTGGCTTTTTGAAGTACAAAGAAATGAAACTTCCAGACACGTCTTCATCATGGTATAATAAGACTATGAACCTTGTGGAATGTCAGAAGTTATGTCTTAAAAATTGTTCGTGTACAGCTTATGCAAATACAGATATCCGAAATGGAGGAAGTGGTTGTCTTCTTTGGTTCGACGATGTGTTTGACATGAGATTATATGAACAATGGGGACAAGATCTATATATTAGAGTCCCTTCAGAACCAgATCATGTTAGTGTTGATATCCCTGGAAGCAAGGACAACTGGATGATGCATAACAAAGCTGTCTTGATTATTGTTGGATTTTTCACATTTACCtgcataataatattcataaggAGATTGGCATCAAGAGTATATGGTCTTTTACTATTTCCAAAGTGGCAAGTATATTCTAGATTGAGAAAGGAAGACATGGATCTGCCAgtatttgatttttcaatcCTTGTTAAAGCCAGTAATAACTTTTCTAGTGTAAATAAACTTGGAGAAGGTGGATTTGGACCTGTCTATAAGGGTACACTCGTAGATGGGAAGGAAGTAGCCATAAAACGACACTCAAAGGTGTCGGATCAAGGATTGGAGGAGTTCAAAAATGAAATTGCGTTGATTGCAAAACTTCAACACCGTAATCTTGTGAATCTTCTTGGTTGCTGCATTCATAAAGAGGAAATGTTGTTGTTATATGAATACATGCCCAACAAGAGCTTAGACTACTTCATCTTTGATGAAACTAGAAGCAAGCTCTTGGTATGGACGCACCGTTCCAACATTATTGCCGGCATTGCTAGAGGACTTCTTTATCTTCATCAAGACTCTAGACTTAAAATTATTCATAGAGATATGAAAACCAGCAATATCCTATTAGATGCTCATATGAATCCAAAAATCTCTGATTTTGGCCTGGCTCGGACATTTCGGGGAGATCAAGTTGaagccaaaacaaaaaaaatggttggAACATaTGGTTACATGCCTCCGGAGTATGCTGTACATGGTCGTTACTCCATGAAATCAGATGTGTTTAGTTTTGGCGTAATAGTATTGGAGATAATAAGTGGGAATAAGATTAAGCGATTTTATGATCCAGAACACTCTCTCAACCTTCTTGGACATGCTTGGAGACTCTGGATTGAAAACATGCCAATGGAACTACTGGATACAGATTTACTTGATATGTGCATTTCTTCAGAAGTCATACGATGCATACATGTGGGGTTATTATGCGTACAACAAAAACCTGGAGATAGGCCGGACATGTCCTCCGTCATTCTTATGTTGAATGGTGAAAAATTATTGCCTCAGCCGAAAGCTCCTGGATTTTATACCGGAAATGGTTCAACTGAAACCATTTCCCCATCCTCAAATCAGATGTCAGCTACAAATTTTGTGGGAAGATAG	1848	0.3604	MKRSVIRFRTGSWNGRAFTGYPIQPLKQQQKFEFVMTDKEVYHRYEIIDKSLICVYRLTLSGNLEALVWTNHTNRLMIYNGVQDACDSYAFCGANSVCSMDGNIAKCECLKGYVPKNPDQWNISYWSSGCFPKMKSICGNNNTSGFLKYKEMKLPDTSSSWYNKTMNLVECQKLCLKNCSCTAYANTDIRNGGSGCLLWFDDVFDMRLYEQWGQDLYIRVPSEPDHVSVDIPGSKDNWMMHNKAVLIIVGFFTFTCIIIFIRRLASRVYGLLLFPKWQVYSRLRKEDMDLPVFDFSILVKASNNFSSVNKLGEGGFGPVYKGTLVDGKEVAIKRHSKVSDQGLEEFKNEIALIAKLQHRNLVNLLGCCIHKEEMLLLYEYMPNKSLDYFIFDETRSKLLVWTHRSNIIAGIARGLLYLHQDSRLKIIHRDMKTSNILLDAHMNPKISDFGLARTFRGDQVEAKTKKMVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGNKIKRFYDPEHSLNLLGHAWRLWIENMPMELLDTDLLDMCISSEVIRCIHVGLLCVQQKPGDRPDMSSVILMLNGEKLLPQPKAPGFYTGNGSTETISPSSNQMSATNFVGR	615

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g02286	615	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	1	611	-	-
	Tsu05g02286	615	Pfam	Protein kinase domain	306	507	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g02286	615	MobiDBLite	consensus disorder prediction	594	615	-	-
	Tsu05g02286	615	Pfam	S-locus glycoprotein domain	8	117	IPR000858	GO:0048544
	Tsu05g02286	615	CDD	PAN_AP_plant	135	221	-	-
	Tsu05g02286	615	SUPERFAMILY	Protein kinase-like (PK-like)	288	585	IPR011009	-
	Tsu05g02286	615	CDD	STKc_IRAK	311	578	-	-
	Tsu05g02286	615	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	426	438	IPR008271	GO:0004672\|GO:0006468
	Tsu05g02286	615	Gene3D	Transferase(Phosphotransferase) domain 1	381	583	-	-
	Tsu05g02286	615	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	1	611	-	-
	Tsu05g02286	615	Gene3D	Hepatocyte Growth Factor	138	216	-	-
	Tsu05g02286	615	SMART	serkin_6	305	576	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g02286	615	ProSiteProfiles	PAN/Apple domain profile.	138	221	IPR003609	-
	Tsu05g02286	615	ProSiteProfiles	Protein kinase domain profile.	305	582	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu05g02286	615	Pfam	PAN-like domain	138	206	IPR003609	-
	Tsu05g02286	615	ProSiteProfiles	EGF-like domain profile.	82	119	IPR000742	-
	Tsu05g02286	615	SMART	ntp_6	141	220	IPR003609	-
	Tsu05g02286	615	Gene3D	Phosphorylase Kinase; domain 1	276	380	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02286	Tsu-Chr5	29932710	29935112	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02286	268	590	Receptor kinase-like Gene Family	AT4G23230	53.869	4.01e-124	378

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu05g02286		Pkinase	2.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02286	-		-	mtr:MTR_8g465570	847.81