Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02285 ATGGCTGGGCCATCATGGTTGGTTGACAAAAGTAGAATTgcaaccaaaataaaatgtgCATCAGGAGCATGTGATCCGAAAGATATTACATGGAAAAGCAATCCTACCAAGACATGCCCAAATTGTCAGCATGTTATTGACAATAGTAATCTTGCAAAAGAGTGGCCTGGCTTACCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTTGGAAATTTAAAACCTCATCCTTTCGTAGATGAGTTTATTAATACTCTTGAAGTGGATGATGGAATTTGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCTTACAATACTGGCACTCGAAAGCGCCGAAAAATACATGATCAGGATTTTGGTGATGTCCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATCTTGAATGGGGCTCAAAAAGGCTGTAAAAAGATAATGGTTCTGTATATGAGCAGTGCCGGGGGAGGAAAAGCCGAGAAAACTAATTGGGTTATGCATCAATATCATTTAGGAACAGAAGAGGATGAAAACGACGGAGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAAGATATTCCTGAAGTCACTGAAGATACAATCATAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCCGACCCTCCTCATAATGAAAGGCAGTATTCAGATGTTGATCTAGGACATGAAACACTTGCCATTCCTCAGATGGATTGTCTGGATGAAATACAAGCTGATTGTGAAGGGCATGCAAAAGAGGATTTATCAGTGGTAGAAACTCAACATAATGAAGTGACagataataatgaaaataatgcTGAAGAAGGGCAAAAATGGTGGGACAGTGAATCACAAAATCTGTTGGATTCACAACAATTGGTTGAAGCATTAGCTTTGTGTGACGATCTACTTCATAGCCAATCTCCCACTAGAGATGGGGAACATGAAGAAAATAAGAACCAACTTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAGAAGGATATCGAAGACTGTCAAAATCTCGTCCTTGACCCTGTAAATTTAGAGCTCGACACACCAGCTACGGAGTTACGACTAAGTCAATTGGATTTTAGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAGTAA 1260 0.3905 MAGPSWLVDKSRIATKIKCASGACDPKDITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFINTLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSSAGGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEDTIIKVDPVTPKSVTPDPPHNERQYSDVDLGHETLAIPQMDCLDEIQADCEGHAKEDLSVVETQHNEVTDNNENNAEEGQKWWDSESQNLLDSQQLVEALALCDDLLHSQSPTRDGEHEENKNQLGLSVYAQLGPEHLKKDIEDCQNLVLDPVNLELDTPATELRLSQLDFSSQDSFIAWGYNK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02285 419 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Tsu05g02285 419 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 416 - -
Tsu05g02285 419 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 416 IPR044799 GO:0003700
Tsu05g02285 419 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Tsu05g02285 419 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Tsu05g02285 419 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02285 Tsu-Chr5 29925875 29930165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02285 35 226 NAC Transcription Factor Family AT1G28470 56.061 5.01e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu05g02285 NAM 6.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02285 - - gmx:100799488 694.501