Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02284 ATGAAGGCTGCATTTGATCCCATAAAAATGAAGGATGTGATTACAAGAAATGAAGAATCAAATCTACAAGAGAACTCAAATCCCTTAAAAATTTCAATGACACAAAATCACAAATATGGTGATAAGAAACCAGAACCAAGcgaaaaaaaagatattttgcCTTGTCTTAAAAAGAAGAGTTCTTCTCCAAGAACAAAACTTTCAGTTCCTCTAGGTGAATTGTCGCATCAAGATATTGATACTAATCAAGATAAATCATCAAGACATTCTGAAATTTCAATGAAGAGAATGGTTGAAGAATGTTTTAGAGTTGATGTTACAAATTCAAAGCAGTGTCTTACTACctcaaaaaacaacaaaagaaaatttgaagATAATAACTTGAATAACATTTTTGTCCatggtgaagatgaagaaggtaTATTTGTTTTACATACAAAGTCAAAAGGCAAAGCTATAAAGTTGGATAATATAGTGGTCAATGAACGAAATTCCAACACATGTCACCAATGCATGAAAAAAGATAGGCTATCATATGCAGTTTGTACAAAATGTCAGAAATTGTACTGTTTCAGGTGTATCGGAAAATGTGATCATTGCGCTACTTCAATTGTTGACTTTCATAGAAGTTGTCCCAAGTGCTCCTTTGAAATTTGTCTCAATTGCTGTAAAGAAATACGAAATGGAAGCATTCAACCACGCTCTGAAATGAAGGCTCAATACATAGATAGAGGTTATGGTTACATGTATGGTGGTGATCCCTATCCTCTACCAGTGTTTTGTAATGCAAGTAATGCAGAGTGCCATGTTCAGACATTCACCAAATGGAATGTAAAAAAAGATGGAAATATTGAATGTGCTCCAAAAGAACTTGGAGGTTGTGGTGAATGTGTGCTGGAGCTCAAGCGCATGCTTCCAATCGGGAGAATACCCAACTTGATATCCAAAGCACACCATATGTTAAAGCGTTTTTGCAATATTGAAGATGAATGGAATGTCGAGGAAGCAATGTCAAGTTGCAAAACGGATAACACCATCTACTGTCCAATGTCAAGTGATCTTACGAAAGAAGGTCTATTTGAATTCCAAAAGCATTGGAGGAATGCTGAGCCAGTTATAGTCCGTGACGTTCTTAGACAAGGGACAGGTCTTAGCTGGGAGCCGATGGTTACTTATAGAGCACTATGTGGAAATTCAGCCTTAGGTGACAACTCAAATGATTCATCGCAAATTACAGCTATTGATTGCTTGTCTGGTTGTGAGGAAGAAATTAACACTCGCAAGTTCTTCGAAGGATATAAGGAgggaagaaaatatataaacttaTGGCCAGCCATGCTAAAGATAAAAGATTGGCCTCCTTATGacaagtttgaaaatgttttgcCGCGACATTGTGACGAGTTTATTCGTTGCTTGCCGTTTCAAGAGTATAGCGATCCTCGATCCGGAATCCTTAACCTTGCTACGAAGTTACCCCCACATGTGATAAAGCCTGACTTGGGTCCAAAAACTTATATTGCTTATGGAATCAAAGAAGAACTTGGAAGAGGAGATTCTGTTACAAAACTTCACTGTGATGTGGCAGACGCGGTGAATATTTTGACTCATACAACCGAGGTGAAATTAACTGATGACCAATATTCTGCTATTAGAAAAGTAAAAAGAGCAAATCTGGCTCAAGATAAGAAAGAGGGTCGTGCTCAAAATAATAAAGGTCCTTTTAAGATTGATGGAAACTATTTTCCAAATGAAATGCCATTTATCACAAAAGAAACAATAGGAATAGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACCAAAAAGTTAGAAGCATATCTAAGAAAACACTCCAATGAATTTAGGCATATTTATTGTTCTCCGGTAAAAGAGGTTGTTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGAGTAGAACCTTGGACATTTGAGCAGAAACTTGGTGAAGCAGTATTTATACCTGCTGGATGTCCACACCAAGTTAGAAATCTCAAGTCTTGCACAAAAGTTGCTGTAGACTTTGTGTCACCAGAAAATGTGCATATTTGCATGCTTTTAACTGACGAGTTTCGTCGTCTTCCTAAAAATCACAAGGCAAGAGAAGACAAACTTGAGATAAAGAAGATGATAGTATTTTCTGTTGACCAAGCTGTTAAAGAATTAGAAGCTTTCATTTGA 2241 0.3525 MKAAFDPIKMKDVITRNEESNLQENSNPLKISMTQNHKYGDKKPEPSEKKDILPCLKKKSSSPRTKLSVPLGELSHQDIDTNQDKSSRHSEISMKRMVEECFRVDVTNSKQCLTTSKNNKRKFEDNNLNNIFVHGEDEEGIFVLHTKSKGKAIKLDNIVVNERNSNTCHQCMKKDRLSYAVCTKCQKLYCFRCIGKCDHCATSIVDFHRSCPKCSFEICLNCCKEIRNGSIQPRSEMKAQYIDRGYGYMYGGDPYPLPVFCNASNAECHVQTFTKWNVKKDGNIECAPKELGGCGECVLELKRMLPIGRIPNLISKAHHMLKRFCNIEDEWNVEEAMSSCKTDNTIYCPMSSDLTKEGLFEFQKHWRNAEPVIVRDVLRQGTGLSWEPMVTYRALCGNSALGDNSNDSSQITAIDCLSGCEEEINTRKFFEGYKEGRKYINLWPAMLKIKDWPPYDKFENVLPRHCDEFIRCLPFQEYSDPRSGILNLATKLPPHVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDVADAVNILTHTTEVKLTDDQYSAIRKVKRANLAQDKKEGRAQNNKGPFKIDGNYFPNEMPFITKETIGIGGALWDIFRREDTKKLEAYLRKHSNEFRHIYCSPVKEVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHICMLLTDEFRRLPKNHKAREDKLEIKKMIVFSVDQAVKELEAFI 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02284 746 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 197 746 - -
Tsu05g02284 746 ProSiteProfiles JmjC domain profile. 481 712 IPR003347 -
Tsu05g02284 746 MobiDBLite consensus disorder prediction 36 57 - -
Tsu05g02284 746 Gene3D Cupin 340 721 - -
Tsu05g02284 746 SUPERFAMILY Clavaminate synthase-like 361 740 - -
Tsu05g02284 746 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN PROTEIN 29 196 - -
Tsu05g02284 746 MobiDBLite consensus disorder prediction 14 90 - -
Tsu05g02284 746 MobiDBLite consensus disorder prediction 19 34 - -
Tsu05g02284 746 CDD cupin_RmlC-like 636 696 - -
Tsu05g02284 746 Pfam JmjC domain, hydroxylase 599 695 IPR003347 -
Tsu05g02284 746 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 197 746 IPR045109 GO:0032454|GO:0033169
Tsu05g02284 746 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 196 IPR045109 GO:0032454|GO:0033169
Tsu05g02284 746 SMART cupin_9 462 712 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02284 Tsu-Chr5 29882187 29886425 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu05g02284 JmjC 3.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02284 K15601 K21989 gmx:100801772 800.045