LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu05g02279	atggatGGAGGTAGTTGCATAGATGAAAGCACCACAACTGAATCACTTTCTGTAACAATACCACCAACAAAGAAACTGTCAACGCCGCCACCTCCCAATAGCCTATGCCGAGTCGGCAGCGGTGCAAGCGCAGTTGTCGACTCCGATGGCAGCGGCGTTGGAGAAGCCGAGTCACGGAAGCTTCCATCATCAAAGTACAAAGGCGTGGTGCCACAACCAAACGGGCGTTGGGGAGCACAGATTTATGAAAAGCATCAGCGTGTATGGCTTGGTACCTTTAACACAGAAGACGAAGCTGCAAGATCTTATGACGTCGCTGCGCAACGGTTCCGTGGCAAAGACGCCGTAACAAACTTCAAACCACTCTCCAACGATGACAACGACGACATGGAAGTCGAGTTTCTTAACTCGCATTCCAAGTCGGAGATTGTTGACATGTTAAGAAAACACACATACAATGACGAGTTAGAACAGAGTAAGCGTAGCCGTGGCTTCATCAACAGAAGAAGCCACGGAGGCTCTAACTGTTCTAACCTCGCCAATTTCGCATCCAGCGATAAAAAGGCGCGTGAGGATCTATTCGAGAAGGTTGTTACTCCAAGCGACGTTGGTAAACTAAACAGGCTAGTTATACCAAAACAGCATGCTGAGAAGCATTTTCCGTTACAGAAAGCAGTCGATTGCGGCGCTGAGGGAAGCGCCGCAGGGAAGGGAGtgcttttaaattttgaagACGTTGGAGGGAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACTGGACCAGATAAACAGCTCTTTATTGATTGGAAAGCAAGAAAGAATGTTAATGAAGTTGGATTGTTTGTTCCGGTTGGACCGGTTGTTGAGCCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCgatgttaataataataatggcaATGCTATTGCTGGGTTATGCATTAATGGAAAGAGGAGGGAGATGGAAATGTTTACTTTGGATTCTTGCAAGAAGCCTAAGATTATTGGAGCTTTGTAA	1140	0.4474	MDGGSCIDESTTTESLSVTIPPTKKLSTPPPPNSLCRVGSGASAVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNTEDEAARSYDVAAQRFRGKDAVTNFKPLSNDDNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFINRRSHGGSNCSNLANFASSDKKAREDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGAEGSAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTGPDKQLFIDWKARKNVNEVGLFVPVGPVVEPVQMVRLFGVNILKLPGSDVNNNNGNAIAGLCINGKRREMEMFTLDSCKKPKIIGAL	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu05g02279	379	Pfam	B3 DNA binding domain	194	302	IPR003340	GO:0003677
	Tsu05g02279	379	MobiDBLite	consensus disorder prediction	1	69	-	-
	Tsu05g02279	379	CDD	AP2	64	119	IPR001471	GO:0003700\|GO:0006355
	Tsu05g02279	379	Gene3D	AP2/ERF domain	64	121	IPR036955	GO:0003700\|GO:0006355
	Tsu05g02279	379	PANTHER	AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR	1	379	-	-
	Tsu05g02279	379	MobiDBLite	consensus disorder prediction	1	23	-	-
	Tsu05g02279	379	SUPERFAMILY	DNA-binding pseudobarrel domain	193	293	IPR015300	-
	Tsu05g02279	379	SUPERFAMILY	DNA-binding domain	64	120	IPR016177	GO:0003677
	Tsu05g02279	379	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	1	379	IPR044800	GO:0003700
	Tsu05g02279	379	ProSiteProfiles	B3 DNA-binding domain profile.	194	305	IPR003340	GO:0003677
	Tsu05g02279	379	Pfam	AP2 domain	64	112	IPR001471	GO:0003700\|GO:0006355
	Tsu05g02279	379	SMART	B3_2	194	306	IPR003340	GO:0003677
	Tsu05g02279	379	CDD	B3_DNA	193	293	IPR003340	GO:0003677
	Tsu05g02279	379	PRINTS	Ethylene responsive element binding protein signature	66	77	IPR001471	GO:0003700\|GO:0006355
	Tsu05g02279	379	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Tsu05g02279	379	Gene3D	-	188	312	IPR015300	-
	Tsu05g02279	379	ProSiteProfiles	AP2/ERF domain profile.	65	120	IPR001471	GO:0003700\|GO:0006355
	Tsu05g02279	379	SMART	rav1_2	65	126	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu05g02279	Tsu-Chr5	29759265	29760964	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu05g02279	5	379	B3 DNA Binding Superfamily	AT1G25560	59.794	7.77e-142	405

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Tsu05g02279		B3	8.1e-29	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu05g02279	K09287		-	gmx:100776987	567