Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02272 ATGTGCAACACTAGACGTGATCCAAACAAGGGAAAAGAGAAAGTGAATGAAGAATTAGTAGTCAATTTCAAGACTAGGGAGATTCAAAACAATGAGAACAAGCGAAAGGCAATCGTTCTAGTTGAACCTGATGTTAAAACGAAGAATTCAAAGAGTTCTAACCATGGTGATGTTGGTGAACAAGAATCAACAAATCCAGCAAAAGAAATTTCTCCATTTCTTTTATTTGGATTCATTATTGATCCAAATAAGAGAATTAAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAATCCAAAAGCATTAGGTGGCCATCAAAATTGCCATAGATTGGAGAGAAGACTCAAAAAAAAGACTGAAGATATGAACAATGATTTGATAAAATACTCAAATGGTATCAATGAGGCTGACTAA 423 0.3357 MCNTRRDPNKGKEKVNEELVVNFKTREIQNNENKRKAIVLVEPDVKTKNSKSSNHGDVGEQESTNPAKEISPFLLFGFIIDPNKRIKHAYSCNFCSRKFINPKALGGHQNCHRLERRLKKKTEDMNNDLIKYSNGINEAD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02272 140 SUPERFAMILY beta-beta-alpha zinc fingers 88 118 IPR036236 -
Tsu05g02272 140 MobiDBLite consensus disorder prediction 41 65 - -
Tsu05g02272 140 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tsu05g02272 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Tsu05g02272 140 MobiDBLite consensus disorder prediction 41 55 - -
Tsu05g02272 140 Gene3D Classic Zinc Finger 78 139 - -
Tsu05g02272 140 PANTHER EXPRESSED PROTEIN 9 124 - -
Tsu05g02272 140 PANTHER ZINC FINGER PROTEIN JAGGED 9 124 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02272 Tsu-Chr5 29710903 29711325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02272 89 125 C2H2 Transcription Factor Family AT5G57520 56.757 1.05e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02272 - - mtr:MTR_7g028915 158.688