Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02271 ATGCAAGCTCATACATTCTCCTACATATCCTCAATTGAAACTAATAATGAAACTGTTGATGAATCTTCCATTTCGCTCTCTCTTGGTCCTCCTGGTACACATCACCTCAAACCTAAACTATCCTCTTCATCAATTCACTCAGCTACTAGTActactcatcatcatcatcaccagaTTCAATGCCAAAAGCAAAACTTTACCATTGATGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCATATTGGTCTTCCAAATACTATTTCACAAAATAACACACCTATTAGCAAATCTGATCATCATTTGGTTTCAGCTCCTATTCAAAGTCAGTATTGGATTCCTTCTCCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTCTGCAATAAAATGTTCAACCGTTTCAACAATATGCAGaTGCATATGTGGGGACATGGATCACAATACAGGAAAGGGCCAGAATCTCTAAGAGGAGTAAAACCAGCTTCATCAATGTTAAGGCTTCCATGCTATTGCTGTGCAGAGGGATGCAAAAACAACATACAGCATCCAAGGTCAAGGCCATTGAAAGATTTCAGGACACTTCAAACACACTACAAGAGGAAACATGGAGCAAAACCATTTGGGTGTAGAAAATGTGGGAAACCATTTGCAGTAAGAGGTGATTGGAGAACACATGAGAAAAATTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACATAAGAGATCACTCAAAGATCATGTTCGTGCTTTTGGTGACGGTCACGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGATGTTTTGTTAGCTTGGTACAAACAAGTCCATTCGCTTCTCATAACTCGTGACCTTGTCGGCTATGTCGACGGCACAATAACTTGCCCTGCTGCCACTACTGGCTCAGGTGATTCTGCAGTAGCAAATCCTGCATACTCCAAATGGATTCGTCAAGATAAACTTTTATATCTTGCTCTACTTGGATCTTGCGACTCTGAAGCATGTGCCGTTATGGCGTCTGCTGATACCTCTCACGAGGCTTGGGTTGCACTTAGGCGAGCCTTCGCCAACAGATCTCGATCTCGAATCTTATCGCTTAGAGAGCGTCTCAGCTCCATATCAAAAGGAAACTCTAGTGTTTCCACATACCTTCAATACATTCGAAATATTGCTGATGAATTAGCGCTTATTGGCCACCCCATTGATGATCTAGACAAGGTCATTCATGCTTTAAATGGTCTGGGACCAGATTTTCGAGAGTTTACCACTGCTGTTCGCACTCGTGATAGTCCCATTGACTTTAACGAGTTGTATGACAAATTGCGCCATCGCAACTTTAATGGACGAGGACGTCACTCATATCACCCAAACGCTGCATCTCCCACTTTCCATCACAAGAAACCGACAGATCCTGCTGCAGTGACTTGTCAGTACTGTGAAAAACCAGGCCATATAGCCAAAAATTGCTTTGAAATACGTGGTTATCCTAAAAGGCATCGCAAACCAACTGTCAACCTTGCACACATGACGAACACATCCAGCTTCTCTCCTCCTGATTGGCTTTTCGACTATGGGGCATCTCATCACATCACCAATGATTTCAACAATCTTTCCATCAAGAATGACTATACTGGAGATGATCATCTGCAAGTTGCTAATGGTAATACACTTCCAATCACACACATAGGTTCCACAACCTTATCTAAATCATCTTCTCCTCCATTAATACTCTCAAATACTTTATGTGTTCCAACAGTTACACAAAATTTAGTTTCAGTTTCTCAACTGTGTAAAACTAACAATGTATCTATTGAATTTTTTCCTTGGCATTTTGAGGTAAAGGAGCTGCGAACGGGGGAAGTGCTGCTGCGAGGACTGAATGAAGATAATGTGTACAAGTACCGTCCCACCTCAACCATTCATCAGACATCACTAGCTACAACCGCAAATTCACTTCAACTTTGGCATCAACGTCTTGGTCATCCAGCTTCAAAACCTCTCCTCCATGCTCTCAAAACCAATAATGTTTCCTTTACTGGATCTTTCAATGTTTGTCATGATTGTTCTGCTAATAAGAGCCACAAACTTCCTTTCTCTAAGTCTACAATTTCTAGTACTTTTCCTTTAGAGATTGTATACTCAGATGTTTGGGGACCTGCTCCTTTTAATTCAATAGATGACCCTACTCCAAACTCAACCTCAACCCCACCAATACCCCCTACACTCAACCCTACACACCAGCCCCATATCACACACTATCCCACTATCTCAGATTCTACTCAACCTCCAAACCCAGCATTAACCCCACTTGTATCCCCTACAACATCAACCAACCAGACCCACATAATTCAACCTCATACCAGCACTAACTCCCCAAATCCAAATTCAAACATACAATCTACATCTAGTCCTAATCTCACATTCTCACCATCCACTGAGACCTCTCACAACTCCCCGACATTGTGCACATTATCTCCAGCTCAGTCAATGCCAGCAGCGCAACCCCCGCTAGCACCCACTCATAACATGGTCACTCGTGGACAAAAAGGTATTTTTAAGCCAAAGAAATTATTTTCAGTGAGCAAATATCCAATTCCTCCTTCTGTGGAACCAACATGTGTGTCTAAAGCACTTCAGCACATTGAATGGAAGCAAGCAATAAACCCAGATGGATCCATTGCTCGCTATAAAGCACGATTGGTTGCAAAAGGATTTCATCAACGTCCTGGCATTGATTTCAAGGACACATTCAGTCCTGTAATCAAACCCCAAACAATCAAGCTAGTACTATGCATTGCCATATCAAAGAATTGGTCACTTAGCCAAATGGATGTCAACAATGCATTTTTGCATGGAACCTTATCTGATGAGGTCTACATGTCTCAGCCTACAGGTTTTGTTCACCCGAATTTTCCACATCATGTATGTAAACTTCACAAAGCTCTTTATGGCCTGAAACAGGCTCCACGTGCATGGTACAATGAGCTTAAATCATTTGTGGTAGAATATGGGTTCAACAATTCAAAATCGGATCCTTCACTTTTTATCTACAACAAAAAcaatgtcatttcatattttctaGTCTATGTTGATGACCTTTTGCTTACAGGAAATGAATCAACCTTTCTTCACAACTTCAAGCAACCTCTTGCCAATAAATTCTCTCTCAAAGATCTTGGTACACCAAATCACTTTCTTGGAGTTGAGCTTCCTCCTACAGCCACTGTAATCTTCATGACGCAACATCATTACATTCGTGACTTGTTGCAAAAGTCAAATATGCTTGACGCCAAACCAGTAAGTACACCCATGTCCACCTCGTGTTCACTTACTTCAAAAGATGATCCCTCAACGTGTGATGCCTCATCCTTTCGAAGCATCGTTGGCTCACTCCACTACTTATCTATCACTCGCCCAGATGTCGCTTTTCCAGTAAATAAGCTTTCACAATTCATGCAAAAGCCAAATGCTACTCATATGCAAGCTCTAAAGAGAGTGCTTCGTTACCTCAAAGCCACTATATCTCATGGATTGCACCTAGTGCCAACAAAGTCTCTCACTCTACATGCTTTCTGTGACGCTGATTGGGGTGGTGACATCAATGACAGAAAATCCACAGGGGCATATATAATCTACCTAGGTTCAAATGCAATATCATGGTCCTGCAAGAAACAACCCACAGTTGCTCGCTCGTCAACAGAAGCTGAATATCGCACCATTGGCTCAACTACTACTGAACTCTTATGGCTACAACAAGTCCTAAAAGAACTTGGAATCAGTCTTCCGCAGCCGCCAACAATCTTTTCGGACAACATTGCCAAGAACCAGCTCACAGTGTCACATGTACCATCCAGTCATCAGCTCGCAGACCTCTTAACTAAGTCACTCTCTTCTGCAAGACATAGCTTCCTGACATCCAAGATTGGCGTCGTGGAGTCCTCCTCCATCTTGCGGGGGCGTATAGGTGTAGTGAGCACATCCCCTTGA 4008 0.4192 MQAHTFSYISSIETNNETVDESSISLSLGPPGTHHLKPKLSSSSIHSATSTTHHHHHQIQCQKQNFTIDDDEQSGVTVALHIGLPNTISQNNTPISKSDHHLVSAPIQSQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIQHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQDVLLAWYKQVHSLLITRDLVGYVDGTITCPAATTGSGDSAVANPAYSKWIRQDKLLYLALLGSCDSEACAVMASADTSHEAWVALRRAFANRSRSRILSLRERLSSISKGNSSVSTYLQYIRNIADELALIGHPIDDLDKVIHALNGLGPDFREFTTAVRTRDSPIDFNELYDKLRHRNFNGRGRHSYHPNAASPTFHHKKPTDPAAVTCQYCEKPGHIAKNCFEIRGYPKRHRKPTVNLAHMTNTSSFSPPDWLFDYGASHHITNDFNNLSIKNDYTGDDHLQVANGNTLPITHIGSTTLSKSSSPPLILSNTLCVPTVTQNLVSVSQLCKTNNVSIEFFPWHFEVKELRTGEVLLRGLNEDNVYKYRPTSTIHQTSLATTANSLQLWHQRLGHPASKPLLHALKTNNVSFTGSFNVCHDCSANKSHKLPFSKSTISSTFPLEIVYSDVWGPAPFNSIDDPTPNSTSTPPIPPTLNPTHQPHITHYPTISDSTQPPNPALTPLVSPTTSTNQTHIIQPHTSTNSPNPNSNIQSTSSPNLTFSPSTETSHNSPTLCTLSPAQSMPAAQPPLAPTHNMVTRGQKGIFKPKKLFSVSKYPIPPSVEPTCVSKALQHIEWKQAINPDGSIARYKARLVAKGFHQRPGIDFKDTFSPVIKPQTIKLVLCIAISKNWSLSQMDVNNAFLHGTLSDEVYMSQPTGFVHPNFPHHVCKLHKALYGLKQAPRAWYNELKSFVVEYGFNNSKSDPSLFIYNKNNVISYFLVYVDDLLLTGNESTFLHNFKQPLANKFSLKDLGTPNHFLGVELPPTATVIFMTQHHYIRDLLQKSNMLDAKPVSTPMSTSCSLTSKDDPSTCDASSFRSIVGSLHYLSITRPDVAFPVNKLSQFMQKPNATHMQALKRVLRYLKATISHGLHLVPTKSLTLHAFCDADWGGDINDRKSTGAYIIYLGSNAISWSCKKQPTVARSSTEAEYRTIGSTTTELLWLQQVLKELGISLPQPPTIFSDNIAKNQLTVSHVPSSHQLADLLTKSLSSARHSFLTSKIGVVESSSILRGRIGVVSTSP 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02271 1335 PANTHER ZINC FINGER PROTEIN WIP6 4 273 - -
Tsu05g02271 1335 MobiDBLite consensus disorder prediction 752 837 - -
Tsu05g02271 1335 SUPERFAMILY DNA/RNA polymerases 890 1277 IPR043502 -
Tsu05g02271 1335 SUPERFAMILY beta-beta-alpha zinc fingers 194 231 IPR036236 -
Tsu05g02271 1335 Pfam gag-polypeptide of LTR copia-type 330 450 - -
Tsu05g02271 1335 SUPERFAMILY Retrovirus zinc finger-like domains 465 504 IPR036875 GO:0003676|GO:0008270
Tsu05g02271 1335 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Tsu05g02271 1335 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Tsu05g02271 1335 Pfam GAG-pre-integrase domain 646 700 IPR025724 -
Tsu05g02271 1335 CDD RNase_HI_RT_Ty1 1196 1305 - -
Tsu05g02271 1335 ProSiteProfiles Zinc finger CCHC-type profile. 483 496 IPR001878 GO:0003676|GO:0008270
Tsu05g02271 1335 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 899 1111 IPR013103 -
Tsu05g02271 1335 MobiDBLite consensus disorder prediction 22 56 - -
Tsu05g02271 1335 PANTHER ZINC FINGER PROTEIN WIP2 4 273 IPR043584 GO:0003700|GO:0010468
Tsu05g02271 1335 MobiDBLite consensus disorder prediction 731 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02271 Tsu-Chr5 29686073 29695420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02271 20 267 C2H2 Transcription Factor Family AT1G13290 67.857 1.31e-108 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu05g02271 RVT_2 2.3e-65 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02271 - - nau:109219799 567