Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02267 ATGCAATTCAACCACAAAATAATGGGATTTCATGACTACATCCAAGCACTTcaggaagaaaagaagaaaatccaAGTTTTCCCCAGAGACCTTCCTCTTTCTCTCGAACTTGTTACCCAAGCCATTGAAAAGTGTAAGCAACAATTGTCTGGAATAACAACAGAGTACAATTTGAATGGTGAAACAGAGTGTTCAGAGCAGACATCAATGGAAGAAGGTCGTGTTTTCGAGGAGTTTATTCCTATCAAGAAAAGAGCATTAACACCTGattatgatgaagaagatgatgattatGAAGAGCAACATTCATCACATAAGATGAAAGCTGATTGGCTACAATCCGTTCAGTTGTGGAATCCTAGCCAACCACCTGCTAAAGAGGAAGTGCCTAGGAAAACAAATGTTGTAGAAGTGAAGAGAAGTGTTGGTGCATTTCATCCATTTCACAGGGAGGAAATTTCTGCTGAAAAGGATAATGCATCAAAAACTTGTAAAGAATCAACCACTTCACCACAAGTACCTTCTACAAGTTCCACTGAACCGGTTGTTGGAACCAGTAGCAAAAGAGATGATAAAGGACAGAGGAAGCAGCGCCGGTGCTGGTCACAGGAACTGCATAAGCGCTTCTTGAACGCCCTTCAACAACTTGGCGGTTCAGATTCTGCCACGCCAAAACAAATAAGAGAACTAATGAATGTTGATGGCCTCACCAACGACGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACAAGAAGGAGCCCGATAATTCACACCAATGCGAATACACAATCAACTCCAATGTTCCTGGTGGGGAACATTTATGTTCAACCACAAGAATATGCTGCAGTAGTTACCACCACAACAGTGTCAGGGGAATCAACCAAAATTACTACTCCAACTGGAATTTATGCACCTGTGGCTATACATCCTCCAACTACAAACACAGTTATAAAGCCAAAGTTTAAGAAATTAGAGTTGTGTGAAAATTCAAATTCTGAAGAAAGGACTAATCATAGTGAAGGAGTTATTGTTCATTCTAACTccccttcatcatcatcttccacaCATAACATAACAACTTCACCTTTTTGTTga 1101 0.3778 MQFNHKIMGFHDYIQALQEEKKKIQVFPRDLPLSLELVTQAIEKCKQQLSGITTEYNLNGETECSEQTSMEEGRVFEEFIPIKKRALTPDYDEEDDDYEEQHSSHKMKADWLQSVQLWNPSQPPAKEEVPRKTNVVEVKRSVGAFHPFHREEISAEKDNASKTCKESTTSPQVPSTSSTEPVVGTSSKRDDKGQRKQRRCWSQELHKRFLNALQQLGGSDSATPKQIRELMNVDGLTNDEVKSHLQKFRLHTRRSPIIHTNANTQSTPMFLVGNIYVQPQEYAAVVTTTTVSGESTKITTPTGIYAPVAIHPPTTNTVIKPKFKKLELCENSNSEERTNHSEGVIVHSNSPSSSSSTHNITTSPFC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02267 366 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 251 IPR006447 GO:0003677
Tsu05g02267 366 Pfam Myb-like DNA-binding domain 198 247 IPR001005 -
Tsu05g02267 366 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 362 - -
Tsu05g02267 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 253 IPR017930 -
Tsu05g02267 366 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 147 200 - -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 147 163 - -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 185 200 - -
Tsu05g02267 366 Gene3D - 195 253 - -
Tsu05g02267 366 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 362 IPR044787 GO:0003700|GO:0006355
Tsu05g02267 366 MobiDBLite consensus disorder prediction 87 106 - -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 164 184 - -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 334 366 - -
Tsu05g02267 366 MobiDBLite consensus disorder prediction 343 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02267 Tsu-Chr5 29512218 29514175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02267 1 310 G2-like Transcription Factor Family AT1G68670 46.588 1.86e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu05g02267 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02267 - - gmx:100819750 404.445