Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02247 ATGACCTTAGAAGCTGTGGTTTTTCCTCAAGATTTACTCAGTTACGGTTCCAAAGATTACTTGTACTCTTTTGTTGAAATTGACACAACTAGAAGTGAAAGATCTTGTAACCACAACTATGGCTGCCAAACAAAAGAAGACCTTTTTggaatcatcaacaataacttAAACCAAAATATCTATACAAATTGtgattcttcttctccttctatGATGCAAAATGGTAAAGACCAATGGGATTCAAACTCTTCCCTTGAAACTTCCAATCTTCCACCATTCGCCGTGGAAGCCACGACTACAAGTCGCAGACGCAAACGACGCCGCGCTGCGACTGCGAGTCCAAAGAACGAGGAGGAAATTGAGAGTCAGAGGATGACTCACATTGCTGTTGAACGTAATAGAAGGAAACAGATGAATGAATATCTAGCTGTCCTTAGATCCATGATGCCGCGGTCTTATGCAAAAAGGGGTGATCAAGCATCCATAGTTGGAGGAGCAATAAACTTCTTGAAGGAGCTAGAGCAGCATCTACAATCcatgaaaggaaaaaagaaaataaaccaaaaaccACATGAATATGGTTCATCATCACCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCGACTTGTGAACATCAAAGTAACACGTGCTACCCTGCCAACCAAATGAATCAGTCACGTGCCATGGCAGATATAGAAGTTAGTTTGGTTGATAGCCATGCTAATATAAAGATAATGTTGAAGAAACGACAAGGACAGGTTATGAAGATGGTTGTTGGGCTCCAAAACCTTGGCTTCAACATTCTACACCTTAATGTTTCTACTGTGGATGATTTGATCCTTGTCTCCGTTAGTGTCAAGGTAGAAGAAGAGTGTCAACTGAACACGGTGGATGAAATTGCAACTGCTGTGAATCAACTATCATGCACAATCCACGTGGAAGCTGTACTTTGA 960 0.3875 MTLEAVVFPQDLLSYGSKDYLYSFVEIDTTRSERSCNHNYGCQTKEDLFGIINNNLNQNIYTNCDSSSPSMMQNGKDQWDSNSSLETSNLPPFAVEATTTSRRRKRRRAATASPKNEEEIESQRMTHIAVERNRRKQMNEYLAVLRSMMPRSYAKRGDQASIVGGAINFLKELEQHLQSMKGKKKINQKPHEYGSSSPPFAEFFMFPQYSTCEHQSNTCYPANQMNQSRAMADIEVSLVDSHANIKIMLKKRQGQVMKMVVGLQNLGFNILHLNVSTVDDLILVSVSVKVEEECQLNTVDEIATAVNQLSCTIHVEAVL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02247 319 MobiDBLite consensus disorder prediction 67 123 - -
Tsu05g02247 319 MobiDBLite consensus disorder prediction 67 96 - -
Tsu05g02247 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 193 IPR036638 GO:0046983
Tsu05g02247 319 Gene3D - 114 189 IPR036638 GO:0046983
Tsu05g02247 319 PANTHER MAX DIMERIZATION, MAD 1 318 - -
Tsu05g02247 319 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Tsu05g02247 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Tsu05g02247 319 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 318 - -
Tsu05g02247 319 SMART finulus 128 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02247 Tsu-Chr5 29220436 29224796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02247 1 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.955 1.29e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu05g02247 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02247 - - gmx:100797856 332.798