Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02244 ATGGCTTTGAAAGAGAGATTGGTATCTTCTTCAGAAACGACGTCGTGTGAAGAACGATATGTAAGCTATGAAGAGGTTTTCGTATCAACAGATAAGGGTCGGAGAGAGGTTCGGTATtatctgaaaaagaaaaacggTGGTTCGGATCTTGCTCTTATAGGTAAAGAGAAGAGTTATAGACACATGTCTTATCACTATGCAATAAGAAAATCTTCTTTGGCTCCTTTCTTCAAACTCAAATCGCGTAGAGAAGTTCTTGATTGGTTGAATTCAATTATTCAAGatttttctTCCGGGGATGCCAATATGGTTGAGGGAAAACCTGGTTATGAACCTGCTGATACCTTGAAGGATAATCAATTGCCGAATCTGCGCCTTTGCATGAAAGAAATTTCATGGTTAGGGTCGCCGTGGACGTGTAAGAAAAGAAGATATCACTATCAGTCATTTAAGCGTAACAATTTTCAGATATCTgtgaatgattttgtgtttgttttagcAGAAGAGAACAAACGTCTGGTTGCCTATTTGGAAGACATGTACGAGGATTCCAGAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTATTGTTTTGCCTCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCCCAGCACTACGAGAAGTATCGGAATGAAGCTTGTCATGCTCGTCCAGAACCATTTGTGTGCAGCAAGaagtttgatgatgatgatgtcaAACCGTTTGATATAACTCAAATGAAGGGTTATTGGAATCAGGAAATACTGAGGTCCATGTATCCTCAGTCTGACTCAAAGTCTAATGGGAGTTCAGGGCAATCAGAAGATAGCCAAGATCTGGAAGAAAACCTACATTCTTCTTCTGGGATCAGACCAAAGAAGAAGCAGCGTTTTACAAAAGTTGATGGAAAAGATGCGGTTGATTTAGTTTCCCTTCCATCTGAAAATTTGATTCATTATAAGATTGAGGCCAAAACCAGTCTTGGAAACAACTCCTTGAATCCGGTTGGGTCCAGCAAGTTGCCCACCATCAAAGAGACAAATGAATTTGCTTCACAGTATTTAGCTGTAGGTTCCCAAGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTCAGAGCTTCTGTTATCAAGAAACACAAAGATAAAGTGAAGGTGCAATATCATGACATCCAGGATGCAGATGATGAAGCTAAGAAGCTTGAGGAATGGATTTTAGCTTCTAAAGTTGTGCTGCTTGATGATATGGGTCTCCGAGTACCTGAGAGGACCAAGATCCGGCCTCAGTCAAACAAACGTGGAATGTCGTTTGTGGGTGATGTTGGTTACGTTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTCTTCAAAAAGAGTCTGATATTAAATATCATGTTTATTTCCCAGGCGAAAAGAAGTTGTTAATTTTTGGTCCTGCTAATTTAAGGCATTCTCAAGATTGGACTGGGAATGGATGGGTAAAAGTGAGGGAAAGGCCTGATCTCGTGGCTTCTATATTATCAAacttgaaaacaaaacaaaacttgtCCAAATCATTTAACAGGAAATCAACCGTAGCAGTTATGGGAGATGGAATACAATCTAAGAAGGCTGATACTTTCTTGGGTTCTTCTGAAAGTGATGAACCTCGAAAGGCTGATGTAGTTCCAGATCTTGTGAAGGATGTTTTGTTATCCCGGTTAAGGTGGAAGTCATCCCGGAAAAGGAATCGAAGTGGTACCTCTCACCAGAAGCAGCAGTCCAATGACGGACACAGGAGATTGTCTCCAAAGTTTCTTGATTCGGATGCAACAGAAAGTTTTGTGATTCCAGCTTCATTGAAAGTTGATCATGATGACTGCAAATACCCTGGAGATCCTTCCATTTTCAGCTCCTCAGTCGTACCATCTTTAACCAACATGGTCATGTGTAGGTGA 2037 0.3947 MALKERLVSSSETTSCEERYVSYEEVFVSTDKGRREVRYYLKKKNGGSDLALIGKEKSYRHMSYHYAIRKSSLAPFFKLKSRREVLDWLNSIIQDFSSGDANMVEGKPGYEPADTLKDNQLPNLRLCMKEISWLGSPWTCKKRRYHYQSFKRNNFQISVNDFVFVLAEENKRLVAYLEDMYEDSRGNKMVVVRWFHRIDEVGIVLPHSFSEREVYFSLYLQDLSIECIDGLTSVLSPQHYEKYRNEACHARPEPFVCSKKFDDDDVKPFDITQMKGYWNQEILRSMYPQSDSKSNGSSGQSEDSQDLEENLHSSSGIRPKKKQRFTKVDGKDAVDLVSLPSENLIHYKIEAKTSLGNNSLNPVGSSKLPTIKETNEFASQYLAVGSQVEVLSQDSGIRGCWFRASVIKKHKDKVKVQYHDIQDADDEAKKLEEWILASKVVLLDDMGLRVPERTKIRPQSNKRGMSFVGDVGYVVDAWWHDGWWEGIVLQKESDIKYHVYFPGEKKLLIFGPANLRHSQDWTGNGWVKVRERPDLVASILSNLKTKQNLSKSFNRKSTVAVMGDGIQSKKADTFLGSSESDEPRKADVVPDLVKDVLLSRLRWKSSRKRNRSGTSHQKQQSNDGHRRLSPKFLDSDATESFVIPASLKVDHDDCKYPGDPSIFSSSVVPSLTNMVMCR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02244 678 Pfam Agenet domain 385 459 IPR008395 -
Tsu05g02244 678 MobiDBLite consensus disorder prediction 288 324 - -
Tsu05g02244 678 Pfam BAH domain 157 263 IPR001025 GO:0003682
Tsu05g02244 678 Gene3D - 126 286 IPR043151 -
Tsu05g02244 678 MobiDBLite consensus disorder prediction 305 324 - -
Tsu05g02244 678 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 13 677 - -
Tsu05g02244 678 SMART BAH_4 155 272 IPR001025 GO:0003682
Tsu05g02244 678 SMART agenet_At_2 467 523 IPR014002 -
Tsu05g02244 678 SMART agenet_At_2 380 446 IPR014002 -
Tsu05g02244 678 MobiDBLite consensus disorder prediction 605 630 - -
Tsu05g02244 678 ProSiteProfiles BAH domain profile. 155 272 IPR001025 GO:0003682
Tsu05g02244 678 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 13 677 - -
Tsu05g02244 678 MobiDBLite consensus disorder prediction 288 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02244 Tsu-Chr5 29165096 29169323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02244 392 521 PHD Transcription Factor Family AT5G58610 28.358 4.99e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02244 - - gmx:100306709 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02244 05 29165096 29169323 Tsu05g02244 05 29165096 29169323 ECH