Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02243 ATGGACACTCAATCACAACAACATCATAAACAAGATTTTGTCGAAGTAGAAGGAGAAGAAAATCGGCTGTTACAATCCGAAGAATGTGAGACAATACCGTTATCCACGCCGCAGTCCTCTCTATCAACAACGTTGGCCGATGGAAATAGAGAGGACTATGTTTACGCGGCTAAAGACAAGGTTCGTATTTTTGACTTGGAGTCAAACGGAAATAGTACCGGATCAACGGTGGTTCCTCCGTTTTCATGGAAGAAGCTCTGGCTCTTTACTGGGCCGGGGCTTCTAATGAGCGTGGCGTTTTTGGATCCAGGAAATTTGGAAGGGGACTTACAAGCCGGTGCGATTGCAGGGTATTCGTTGCTTTGGCTTTTAATGTGGTCCACCATTATGGGACTCTTCATACAACTCCTATCGGCGAGGCTTGGTGTTGCCACCGGGCGCCACCTTGCGGAGCTTTGTAGAGAAGAGTATTCCAATTGGGCTAGATTAGTTTTGTGGTTCCTAGCTGAGTTGGCTTTGATTGCAGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTCTTAAGATTCTTAGCCATGGGCTTCTTCCCATTTGGGCAGGTGTTGTAATCACTGCCTTTGATTGtttcttctttctatttttggAGAATTATGGAGTAAGGAAGTTAGAAGGTGTTTTTGCTATTTTCATTGGAACTATGGGCTTTTCTTTTGCATGGATGTTCTTTGATACAAAGCCAAGTGAAGAAGAACTTCTTATGGGTCTTTTAATCCCACGAGTTAGCTCAAAAACACTTCGTCAAGCAGTCGAAATCGTAGGCTGTGTGATAACCCCACATAATGTATTTCTCCATTCAGCATTAGTACAATCAAGAGACATTGACATCCGCAACAAAGGCCAAGTTCAAGAAGCTCTAAATTACTATTCAATTGAGTCCACAATAGCACTTTTAATCACATTAGTAATCAATCTATTTGTGATAACAGTTTTTGCTAGAGTATTCTATGGTACAGAACAAGCCAAAGACATAGGATTAGTAAATGCAGGACAATATCTTGAAGATAAATATGGTGGTGGATTTTTTCCAATTCTATATATTTGGGGTATTGGTTTATTAGCAGCTGGACAAAGTAGCACAATTACTGGTACCTATGCTGGACAATTTATAACTGAaggttttctaaaattgaaTATTAAGAAATGGTTAAGGGCATTGATTACTAGAAGTTGTGCTATTGTTCCAACTATGATTGTAGCAATTGTTTTTAATACTTCTGAAGGTTCTTTGGATACTTTGAATGAATGGCTTAATGTCCTTCAAGCTATACAAATTCCTTTTGCACTTATTCCTCTTCTTACTTTGGTTTCTAAACAAGAGGTTATGGGAACATTTAGAATTGGGCCTCTTTTAGAGAGGAAGGAGACTCTAGGAATCCTGAGTTCGGCCGCAAGGTTAGGAAAGTCTGGTCAAAAATTGTCTCCACCAAAACTGGAACTCGAGTTCTTCCGAACAATCCGTCTGTTTACCAATGTTTTTGATAAACAATAG 1551 0.3926 MDTQSQQHHKQDFVEVEGEENRLLQSEECETIPLSTPQSSLSTTLADGNREDYVYAAKDKVRIFDLESNGNSTGSTVVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLFIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIALKILSHGLLPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAIFIGTMGFSFAWMFFDTKPSEEELLMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESTIALLITLVINLFVITVFARVFYGTEQAKDIGLVNAGQYLEDKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKQEVMGTFRIGPLLERKETLGILSSAARLGKSGQKLSPPKLELEFFRTIRLFTNVFDKQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02243 516 Hamap Divalent metal cation transporter MntH [mntH]. 72 483 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 438 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 269 292 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 376 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 195 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 404 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 220 241 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PRINTS Natural resistance-associated macrophage protein signature 165 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g02243 516 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 46 473 - -
Tsu05g02243 516 Pfam Natural resistance-associated macrophage protein 107 468 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 46 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu05g02243 516 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 84 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02243 Tsu-Chr5 29072812 29076344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02243 49 473 Inorganic Solute Cotransporters AT1G47240 75.059 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02243 K21398 - gmx:100801411 807.749