Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02242 ATGTGTTATTGGAGATTCAAATCTTCAGAAGTGAAAAACAAATCAAGAACCAATCATTATGGTCTCTCGAGAAATACAACAATCCCGGAAAGTGGAGCTGTCTACTTTGGGATCCCTGTCTTCTCTTATGATGAGCTCAAAGAAGCAACAAATAATTTTGATCAAGCTAGACAGATTGGAGAAGGGGGCTTTGGGACTATTTACTACGGAAAGCTACGAGATGGACGTGAAGTTGCGGTGAAGCGCCTATTCGAGCGCAACTACAGACCAGTAGAATCATTCACGAACGAAATTCAAATCCTCACACGCATGCGTCACAGAAATCTTGTATCCCTTTATGGCTGCACATCACGCCACAGTCGTGAGTTGCTTCTAGTATACGAATATGTCCCAAATGACACTGTCAGTAGCCATCTCCACggagaaaaagcaaaaaacaacCCACCATTACCATGGGCAGTGAGAATAAAAATAGCCATAGAAACAGCCGGCGCATTAACTTATCTTCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTCGACAACAGCTTTTGTGTTAAGGTTGCCGATTTTGGTCTTTCGAGACTATACCCTAATGATGTCACACACGTCTCTACAGCACCGAGAGGAACACCGGGATATGTTGATCCGGAATATCGCTTATGTTACCAACTGACAGACAAGAGTGATGTATATAGCTTCGGCGTAGTTCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTAACAAGGGATAGAGACGACATTAAGTTGGCAAATCTAGCCTTAAGGAAGATTCGAAGAAGCGAATTTCATGAGTTAATTGATCCTTCTCTTGGTATTCAGACAAATGAGAGATtaaaaaatgtgataatttgtGTTGCAGAATTGGCTTTTCAGTGTTTGCAAGATGAGAAGGAATTGAGACCCTCTATGAGTGAAGTATTGGAAGTGCTGCAGAGAATTGAAAGTGATAAGAATGAAGGAGAGAATCATGAGGGGGTTGATTTTCATCTTGGAGTAGAAGTAGTACAAAGTTATGCACATCCGTCACTTCCAAACACTTGGATGAAGCCACATCGCCATCGACAAACACTTTGA 1122 0.4073 MCYWRFKSSEVKNKSRTNHYGLSRNTTIPESGAVYFGIPVFSYDELKEATNNFDQARQIGEGGFGTIYYGKLRDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYVPNDTVSSHLHGEKAKNNPPLPWAVRIKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTDKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLALRKIRRSEFHELIDPSLGIQTNERLKNVIICVAELAFQCLQDEKELRPSMSEVLEVLQRIESDKNEGENHEGVDFHLGVEVVQSYAHPSLPNTWMKPHRHRQTL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02242 373 Pfam Protein kinase domain 54 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02242 373 SMART serkin_6 53 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02242 373 CDD STKc_IRAK 59 329 - -
Tsu05g02242 373 Gene3D Phosphorylase Kinase; domain 1 29 129 - -
Tsu05g02242 373 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 341 IPR044652 -
Tsu05g02242 373 Gene3D Transferase(Phosphotransferase) domain 1 130 352 - -
Tsu05g02242 373 ProSiteProfiles Protein kinase domain profile. 53 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02242 373 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Tsu05g02242 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Tsu05g02242 373 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 341 - -
Tsu05g02242 373 SUPERFAMILY Protein kinase-like (PK-like) 32 331 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02242 Tsu-Chr5 29069612 29072740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02242 12 335 Receptor kinase-like Gene Family AT1G25390 62.270 1.04e-142 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu05g02242 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02242 - - var:108334729 527.324