Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02234 ATGGAAGAACAAATCCACAACAATATccacaacaataacaacactAAAAGAATAAACACAAATTCCAACACGTGCTTAAAATTATTTGGTTTCAGCGTCCATGAAGAAAACGATGAagaatcatcatcaccatcaccaCCAGCAGCAGCTGCACCACCGGCACCGCCACATGAAGATATAACCGGAAACACTTCACCGTCCGGTTCGACAGAATCCATCAGCGGAGACGGTGGTGCTTCAAGCTTAAATCCTTCCACCGGTGACCGGAAATACGAGTGTCAATATTGTTGTCGTGAATTCGCAAATTCACAAGCACTTGGTGGACACCAAAACGCTCATAAAAAAGAGCGACAACAACTCAAACGAGCACAATTACAAGCTTCACGAAACGCTGCCGTTTCGTTTGTTAGAAATCCGATCATCTCCGCTTTTGCACCGCCGCATCATCTGCTAACTTCGCCGGGACAAGTTATGATGCCGACTGCTCCTCCGTCGTGGGTTTACATGCAACCACGTACAGCACCACCTCCTTTCCACGTGTCAGTTTCACACGGTTGTGGTTTTCCGTCTCCGAACAACGGTATTAGTAACTGTaacggtggtggtggtggtaatAGTTATAGCTTTATAACAGGTGCAAGATCCGCGAGTGCAGGTGTGTTACCGTGTGTGAGTGGAGTAGGGGATTCTTTACCCACATTGTCAAATATGGGCTCACAAGTACAGAGTCTGGCCCAGTTTGGGAAACTTGATGGGCCATCTTTGAGTAGGTTCTCTAAAGCAGATGTAGGGCCCAACTTTGATGATGGATTTGGTTTGGATTTGCATCTTAGCTTATCCCCACCATGA 849 0.4311 MEEQIHNNIHNNNNTKRINTNSNTCLKLFGFSVHEENDEESSSPSPPAAAAPPAPPHEDITGNTSPSGSTESISGDGGASSLNPSTGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPHHLLTSPGQVMMPTAPPSWVYMQPRTAPPPFHVSVSHGCGFPSPNNGISNCNGGGGGNSYSFITGARSASAGVLPCVSGVGDSLPTLSNMGSQVQSLAQFGKLDGPSLSRFSKADVGPNFDDGFGLDLHLSLSPP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02234 282 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Tsu05g02234 282 PANTHER ZINC FINGER PROTEIN 5 19 281 IPR044299 GO:0010090
Tsu05g02234 282 MobiDBLite consensus disorder prediction 1 20 - -
Tsu05g02234 282 PANTHER ZINC FINGER PROTEIN GIS3 19 281 - -
Tsu05g02234 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Tsu05g02234 282 SUPERFAMILY beta-beta-alpha zinc fingers 86 118 IPR036236 -
Tsu05g02234 282 Gene3D Classic Zinc Finger 70 138 - -
Tsu05g02234 282 MobiDBLite consensus disorder prediction 60 85 - -
Tsu05g02234 282 MobiDBLite consensus disorder prediction 34 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02234 Tsu-Chr5 28936675 28937875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02234 26 281 C2H2 Transcription Factor Family AT1G68360 45.283 1.35e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02234 - - gmx:102663095 302.753