Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02210 ATGTGTAAGCGAAAGGCAATCGTGTTAGTAGAATCTGATAGTGAAATAAAGAATTCAATGAGTGCCAACATTGGCGATGCTGGTGAAGATGAATTAACAAATTCATCCAAAAAAATTTCTCCATTTCTCCTGTTTGGGTTCATTATTGATCCTCATAAGGGCATTCAACATGCTTACACATGCAATTTTTGTAGCCGAAAATTCCTTACTCCTCAGGCATTAGGTGGCCATCAAAATTCCCACAAATTGGAGAGAAGACTCAAAAAGAGGATCGAAACTATCAACACTGATTCAATAAATCATGCAAATAGTAACCAAGGGGTGGTAAGCCTAAATGCTGTGACTCCATGCCATGGTATTGATGAAGTGATCAATGATGCTGGTCAAAGCATTGTTAGTCGACAAGCTACTATGACTGAGGTTGACCATGGTTCAATTTCAAATGGGGATGATGATGTTGATCATGAAGACAAAGATACTCAAGAGGAGGAAGCAATCCAAGATGATTTGATCCTTAAGCTctga 525 0.3829 MCKRKAIVLVESDSEIKNSMSANIGDAGEDELTNSSKKISPFLLFGFIIDPHKGIQHAYTCNFCSRKFLTPQALGGHQNSHKLERRLKKRIETINTDSINHANSNQGVVSLNAVTPCHGIDEVINDAGQSIVSRQATMTEVDHGSISNGDDDVDHEDKDTQEEEAIQDDLILKL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02210 174 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Tsu05g02210 174 MobiDBLite consensus disorder prediction 140 168 - -
Tsu05g02210 174 Gene3D Classic Zinc Finger 47 110 - -
Tsu05g02210 174 PANTHER EXPRESSED PROTEIN 2 97 - -
Tsu05g02210 174 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Tsu05g02210 174 PANTHER ZINC FINGER PROTEIN JAGGED 2 97 IPR045320 GO:0003700
Tsu05g02210 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02210 Tsu-Chr5 28441309 28441833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02210 59 106 C2H2 Transcription Factor Family AT5G57520 52.083 2.48e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02210 - - mtr:MTR_7g028915 162.925