Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02207 ATGGGTCCTCCACCAAATCACAAACAAAAGTTATCTCATGTCTCTAAAAGCACAAGAAGATTGAAAGTTATCTATGATGATCCTGATGCAACAGATTCATCATCTGACGAAGCAATTTACGAACCAATGATGAGGAAGagagttgttcttgaatttGCACTCCCTGATGTTTGTGTTAATGAAACAAAGGTTGATAATGGATTCAACAAGAATGAGAGTTCTGCAAAGACAACAACACCTGTAGTGAAGGAACAATCATGCAAACAGAAAGGTGTTCGAATGAGGAAATGGGGTCGGTGGGCTGCAGAAATTCGTAATCCGTTTGAAGGTAGGCGCGAATGGTTAGGTACTTTCGACACTGCTGAAGAGGCTTCGAAAGCTTATGAAACTAGAAAGCTTGAATTTGAAGCCATAAATAAGAAGAGTATGTATGCCTCTTTGAATGACGGCTCAAAGAGTGATACTGATACGTCGAATACATCATCTTTGCTCGAATTGGTTAACTCTGTTTCGGATGTGATTGAGAGTTGTACGGTTTCGATCAAAGGAGATATTGTTGAGAGTGTTGAGACTAATAATCGTTTGGAGGCTGAAtttttggaacaaaatgtgcGTGAGTTAAGTCCTTTGAATGCAGTGCAACAACCGGATGTAGTTGAGAATTCAGATACATCTCGGTTTGACTTGGATTGTTTAACATTTGATGGTTCAGGGCAGGAGTTGGCTGATCTTGGTTGCCTTGACAACCTTCAGTATtgtgattttgatgataacaacgGACCTTTTGATATTCCGGATTTTAACTTTGATGATATTATTGATGCTGATGTTGCTGatgagatttctagttggttTGAAGATTTCCCAGATAAACCATGTCCATAA 885 0.3638 MGPPPNHKQKLSHVSKSTRRLKVIYDDPDATDSSSDEAIYEPMMRKRVVLEFALPDVCVNETKVDNGFNKNESSAKTTTPVVKEQSCKQKGVRMRKWGRWAAEIRNPFEGRREWLGTFDTAEEASKAYETRKLEFEAINKKSMYASLNDGSKSDTDTSNTSSLLELVNSVSDVIESCTVSIKGDIVESVETNNRLEAEFLEQNVRELSPLNAVQQPDVVENSDTSRFDLDCLTFDGSGQELADLGCLDNLQYCDFDDNNGPFDIPDFNFDDIIDADVADEISSWFEDFPDKPCP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02207 294 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Tsu05g02207 294 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Tsu05g02207 294 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR-LIKE PROTEIN 9 198 - -
Tsu05g02207 294 Gene3D AP2/ERF domain 88 148 IPR036955 GO:0003700|GO:0006355
Tsu05g02207 294 ProSiteProfiles AP2/ERF domain profile. 88 150 IPR001471 GO:0003700|GO:0006355
Tsu05g02207 294 Pfam AP2 domain 87 130 IPR001471 GO:0003700|GO:0006355
Tsu05g02207 294 CDD AP2 87 128 IPR001471 GO:0003700|GO:0006355
Tsu05g02207 294 SUPERFAMILY DNA-binding domain 88 135 IPR016177 GO:0003677
Tsu05g02207 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 198 - -
Tsu05g02207 294 SMART rav1_2 88 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02207 Tsu-Chr5 28360105 28360989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02207 6 279 AP2-EREBP Transcription Factor Family AT1G68550 32.890 4.35e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g02207 AP2 2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02207 - - mtr:MTR_5g057647 202.986