Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02206 ATGGGTCCTCCACCAAACCGcaaaaaaaagttatcttaTGTCTCTGAAAGCACAAGAAGATTGAAAGTTATTTATGATGATCCTGATGCAACAGATTCATCATCAGACGAAGCAAATTACGAACAATTGATGAGGAAGagagttgttcttgaatttGCAATTCCTGATGTTTGTGTTAATGAAACAAAGGTTTATAATGGATTGAACAAGAGTAAGAATTCTGCAAAGACAACAACACTTATTGTGAAGGAACAATCATGCAAATACAAAGGTGTTCGGCCCAGGAAATGGGGTAAATGGGCTGCAGAAATTCGTAATCCGATTAAACGTAAGCGCGAATGGTTAGGTACTTTCAACACTGCTAAAGAGGCTTCGAAAGCGTATGAAACTAGAAAACTTGAATTTGAAGCCATAATTAAGAAGAGTATGTGTAAAGTGAAGAAAAACACTAGCTTTAACAGTGTTGCTACTTTGAATGGCGGCTCAAAGGATGATATTGATATGTCGGATACATCATCTTTGCCCGAATTGGTTAATTCTGTTTCGGATGTGATTGAGAGTTGTACAGTTACGATCAATGAAGCTATTGTTGAGTGTCTTGAGACTAATAATCTATTGGAGACTGAatttttggaacaaaatatgcgGGATTTAAGTCCTATGAATGCAGTGGAACAACCGGATGTAGTTGAGAATTCAGATACATCTCGGTTTGACTTGGATTGGTTAACATTTGATGGTTCAGGACAGGGGTTGGATGATCTTGGTTGCCTTGACGACCTTCAGTATTGTGATTTTGATGACAACTATGGACCTATTGATCTTCCAgatattaattttgatgatattggtAGTGTTGATGAGAGTATTGCTGATGAGATTGCTAGCTGGTTTGAGGATTCCCCAGATAAACCATGTCCATAA 924 0.355 MGPPPNRKKKLSYVSESTRRLKVIYDDPDATDSSSDEANYEQLMRKRVVLEFAIPDVCVNETKVYNGLNKSKNSAKTTTLIVKEQSCKYKGVRPRKWGKWAAEIRNPIKRKREWLGTFNTAKEASKAYETRKLEFEAIIKKSMCKVKKNTSFNSVATLNGGSKDDIDMSDTSSLPELVNSVSDVIESCTVTINEAIVECLETNNLLETEFLEQNMRDLSPMNAVEQPDVVENSDTSRFDLDWLTFDGSGQGLDDLGCLDDLQYCDFDDNYGPIDLPDINFDDIGSVDESIADEIASWFEDSPDKPCP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02206 307 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Tsu05g02206 307 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Tsu05g02206 307 SMART rav1_2 88 142 IPR001471 GO:0003700|GO:0006355
Tsu05g02206 307 Gene3D AP2/ERF domain 87 149 IPR036955 GO:0003700|GO:0006355
Tsu05g02206 307 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 10 284 - -
Tsu05g02206 307 SUPERFAMILY DNA-binding domain 88 135 IPR016177 GO:0003677
Tsu05g02206 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 284 - -
Tsu05g02206 307 CDD AP2 87 128 IPR001471 GO:0003700|GO:0006355
Tsu05g02206 307 Pfam AP2 domain 87 130 IPR001471 GO:0003700|GO:0006355
Tsu05g02206 307 ProSiteProfiles AP2/ERF domain profile. 88 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02206 Tsu-Chr5 28355093 28356016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02206 6 283 AP2-EREBP Transcription Factor Family AT1G68550 34.256 8.99e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu05g02206 AP2 3.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02206 - - mtr:MTR_5g057647 221.476