Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02205 ATGGGTCCTCCACCAAATCGCAAACAAAAGTTATCTTACGTCTCTGAAAGCACGAGAAGATTGAAAGTTATCTATGATGATCCTGATGCAACAGATTCGTCATCTGACGAAGCAACTTACGAACCATTGATGAGGAAGagagttgttcttgaatttGCACTCCCTGGTGTTTGTGTTAATGAAACAGAGGTTGATATTGGATTGAACAAAAATAAGAGTTCCGCAAAGACAACAACACCTAAGGTGAAAGAACAATCAAGCAAACACAAAGGTGTTCGAATGAGGAAATGGGGTCGATGGGCTGCAGAAATTCGTAATCCAATTAAAGGTACGCGTGAATGGTTAGGTACTTTCAACACTGCTGAAGAGGCTTCAAATGCGTATGAAACTAGAAAACTTGAATTTGAAGCCCTAACTAAGAAGAGTATGTGTAAAGTGAAGAAGAACACTAGTTTTAACAGTGTTGTTACCTTTGAGAATATGTTTGCTTCTATGAATGACGGCTCAAAGAGTGATACTgatagatcaaatacatcatCTTTGCCCGAATTGGTTAATTCTGTTTCGGATGTGATTGAGAGTGGTACAGTTTCGATCAATGAAGTTATTGTTGAGAGTTTTGAGATTAATAATGGTTTGGAGGCTAAAATTTTTGAACAAAATGTGCTGGATTTAAGCCCTTTGAATGTAGTGCAACAAGCGGATGTAGTTGAGAATTCGGATACATCTCGGTTTGACTTGGATTGGTTAACATTTGATGGTTTGGGGCAGGGGTTGGATGATCTTGATTGTCTTGACGACCTTCAGTATTGTGATTTTGATAATTACAACGGACCTATTGATATTCCGAATTTTAACTTTGATGATATTATTGGTGCTGACGAGAGTGTTGCTGATGAGATTGACAGTTGGTTTGAAGATTCCCCAAATAAACCATGTCCATAA 945 0.3704 MGPPPNRKQKLSYVSESTRRLKVIYDDPDATDSSSDEATYEPLMRKRVVLEFALPGVCVNETEVDIGLNKNKSSAKTTTPKVKEQSSKHKGVRMRKWGRWAAEIRNPIKGTREWLGTFNTAEEASNAYETRKLEFEALTKKSMCKVKKNTSFNSVVTFENMFASMNDGSKSDTDRSNTSSLPELVNSVSDVIESGTVSINEVIVESFEINNGLEAKIFEQNVLDLSPLNVVQQADVVENSDTSRFDLDWLTFDGLGQGLDDLDCLDDLQYCDFDNYNGPIDIPNFNFDDIIGADESVADEIDSWFEDSPNKPCP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02205 314 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 291 - -
Tsu05g02205 314 SMART rav1_2 88 142 IPR001471 GO:0003700|GO:0006355
Tsu05g02205 314 ProSiteProfiles AP2/ERF domain profile. 88 153 IPR001471 GO:0003700|GO:0006355
Tsu05g02205 314 SUPERFAMILY DNA-binding domain 87 135 IPR016177 GO:0003677
Tsu05g02205 314 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Tsu05g02205 314 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Tsu05g02205 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 14 291 - -
Tsu05g02205 314 MobiDBLite consensus disorder prediction 71 90 - -
Tsu05g02205 314 Pfam AP2 domain 87 134 IPR001471 GO:0003700|GO:0006355
Tsu05g02205 314 Gene3D AP2/ERF domain 88 148 IPR036955 GO:0003700|GO:0006355
Tsu05g02205 314 CDD AP2 87 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02205 Tsu-Chr5 28284910 28285854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02205 6 290 AP2-EREBP Transcription Factor Family AT1G68550 32.323 9.35e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g02205 AP2 4.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02205 - - mtr:MTR_5g057647 223.787