Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02188 ATGGTTAAGACAGAgatcaacaaagaaaaatcaaaggcaatgcaacaaaaaacattatcatcatcatcagcaTCTTCATCATCAGCAAGAAATGCATCAAAtgagatgaagaagaagtaTAAAGGTGTGAGAATGAGGAGTTGGGGTTCTTGGGTTTCAGAAATTAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCATATTCAACTGCAGAAGCTGCTGCTAGAGCTTATGATGCAGCACTTTTATGCCTTAAAGGTTCCTCTGCAACAAATCTTAATTTTCCTTTAGAAATTTCTTCACATTTCATTCCTCAAGACAACACTGCCATGTCACCTAAATCAATCCAAAGAGTAGCTGCTGCTGCTGCAGCTGCAGCTGCTGGTGCTGTTAGTAACAATGATATTGCTATTAgcaccccaccactttctcctCCTAATCTTGCTTCAACAACAACTTCATCTTCAATTGTTTCTTCTCCATCAATGTCATCTTCTCCTTCTGATCaagttgatgatgatgtttcacttttttcttcttttggggTCCACTCTAGCTGTGGTGGTGATTATCAAGCAAATGAATCAATGGCTATGATGGATTCTTGGTATGGTTTTGATGGTTTACAATCACCAAAACATGTTGATCAAATGATGCTAAATGGTGCTTTATTTGATATTGATTCAACTCAAGTACTTCTTGATGATTGGTATGAAGAAGGTGATATTAGTTTGTGGAGTTTCTACTAA 753 0.3054 MVKTEINKEKSKAMQQKTLSSSSASSSSARNASNEMKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPLEISSHFIPQDNTAMSPKSIQRVAAAAAAAAAGAVSNNDIAISTPPLSPPNLASTTTSSSIVSSPSMSSSPSDQVDDDVSLFSSFGVHSSCGGDYQANESMAMMDSWYGFDGLQSPKHVDQMMLNGALFDIDSTQVLLDDWYEEGDISLWSFY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02188 250 MobiDBLite consensus disorder prediction 1 40 - -
Tsu05g02188 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 20 249 - -
Tsu05g02188 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 249 - -
Tsu05g02188 250 SMART rav1_2 39 103 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 MobiDBLite consensus disorder prediction 13 33 - -
Tsu05g02188 250 CDD AP2 38 97 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 MobiDBLite consensus disorder prediction 142 172 - -
Tsu05g02188 250 ProSiteProfiles AP2/ERF domain profile. 39 97 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 SUPERFAMILY DNA-binding domain 39 99 IPR016177 GO:0003677
Tsu05g02188 250 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Tsu05g02188 250 Gene3D AP2/ERF domain 38 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02188 Tsu-Chr5 28066796 28067804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02188 40 249 AP2-EREBP Transcription Factor Family AT1G21910 46.789 3.18e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu05g02188 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02188 - - mtr:MTR_5g058470 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02188 05 28066796 28067804 Tsu05g02188 05 28066796 28067804 ECH