Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02178 ATGGAGATTGACATAGACATGGTCATGGATGTTGTCCCTGATATCCTCGAATTCTCCAATTACAGTAACACTACAACCACACCCACTTCAGATGAAGGCATCACTTGGTCCCCTCTCCTCGATTTAGATTTCTTCACCACAAACCAAGATCACTTCCACGACTTCATTGATTCCCTCACCAACGATGAAATCATAACCGTTGATCCAAATCAAGGCAAAACTGTCTCCGAccaagatgaagaagaagaaggatccaTGGTAGACATGTCCAACTCCAATTCCACGACAGAGGAACACAACGACGGCGACGATAGAAAGGGCCTCCGTCTTGTGCACCTCCTTATGGCGGCAGCGGAGGCCTTAACAGGCACAAACAAAAGCCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAAGACTTAGTTTCTTCCACTCACGGCACCAACATAGAGAGACTCGCCGCCTATTTTACCGACGCCCTCCAAACACTAGTAAACGGCGCCGATACTGCCCACGGTAACACCAATAACAACCACCACAACAAACTTTGCTTACTCACTGGACCACACCAAACAGATTTACTCTCAGCTTTTCAGCTTCTTCAAGATATGTCCCCTTACGTCAAGTTCGCTCACTTCACGGCTAATCAAGCCATCCTTGAAGCCGTTACTCATGAAAGAAGAGTTCACATAGTTGACTATGATATCACGGAAGGGGCCCAATGGGCTTCATTAATTCAGTCACTTTCATCACGTAAAGAAGGCCTGCCGGGCCCACATCTTCGAATCACTGCGTTGTCCAGAAACAAAGAACGTGGCAGTGGTCGAAGATCAACCACTGCTACTGTTCAAGAAACTGGACGACGTTTAACTTCGTTTGCGGCTTCTGTTGGACAACCGTTTACTTTTCATCAATGTAGATTGGATTCAGACGAAATGTTTCGAGCTTCTTCTTTGAAGCTTGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTGATGCATTTACCACATCTTAGTTACCGTGCCTCAGATTCTGTTGCTTCGTTTTTCAATGGTGCGAAAGAATTGGGATCAAAACTTGTGACATTAGTTGAAGAGGAAGTGGGGCCCACTAGTGAAGATGGCTTTGTGGGATTGTTTATGGATTCTTTGCACCGTTATTCTGCTATGTATGATTCACTTGAGGCTGGATTTCCTATGAATAAATGGGCTAGGAGTTTAGTTGAACAAGTGTTTTTAGGCCCTAGAATAATGGGCTCAGTGGCCCAATTATACATGAATGGTGAAGAGGAGGGGGAAGTGAGGGCTTCTTGGGGGGAGTGGTTGGGTGCGGAGGGGTTCAAGGGAGTTACCGTAAGCTACGGTAATCATTGTCAATCGAAGTTATTATTGGGTCTATTTAACGATGGTTATAGGGTGGAGGAAATGGGTAACAATAAGTTAGTGTTGGGTTGGAAATCAAGGCGTTTGCTTTCGGCTTCTATTTGGACTTGTATGTCAAAGTCGGAATTTGAATttaggtga 1524 0.4423 MEIDIDMVMDVVPDILEFSNYSNTTTTPTSDEGITWSPLLDLDFFTTNQDHFHDFIDSLTNDEIITVDPNQGKTVSDQDEEEEGSMVDMSNSNSTTEEHNDGDDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNIERLAAYFTDALQTLVNGADTAHGNTNNNHHNKLCLLTGPHQTDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDYDITEGAQWASLIQSLSSRKEGLPGPHLRITALSRNKERGSGRRSTTATVQETGRRLTSFAASVGQPFTFHQCRLDSDEMFRASSLKLVRGEALVFNCVMHLPHLSYRASDSVASFFNGAKELGSKLVTLVEEEVGPTSEDGFVGLFMDSLHRYSAMYDSLEAGFPMNKWARSLVEQVFLGPRIMGSVAQLYMNGEEEGEVRASWGEWLGAEGFKGVTVSYGNHCQSKLLLGLFNDGYRVEEMGNNKLVLGWKSRRLLSASIWTCMSKSEFEFR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02178 507 MobiDBLite consensus disorder prediction 67 104 - -
Tsu05g02178 507 PANTHER SCARECROW-LIKE PROTEIN 26 21 498 IPR030028 -
Tsu05g02178 507 Pfam GRAS domain family 110 497 IPR005202 -
Tsu05g02178 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 21 498 IPR005202 -
Tsu05g02178 507 ProSiteProfiles GRAS family profile. 101 497 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02178 Tsu-Chr5 27697112 27698635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02178 104 500 GRAS Transcription Factor Family AT3G54220 35.661 8.89e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu05g02178 GRAS 8.6e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02178 - - pvy:116133868 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02178 05 27697112 27698635 Tsu05g02178 05 27697112 27698635 ECH