Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02162 ATGGAAGTTGTTGATGAGAATAGAGAACTTAATATTGAAGGAAACAGAGAGTATGTTGTTGATTCACATGTTAACAATGATTCACATGTTAGTGATTCAAATGCTGATGGAAATCAAGAACCATACATTGGAATGGAATTTGCCTCACAAGAAAATGCTCATTCATTCTATGTTCACTATGCAAAATGTGTTGGGTTTGGGATTTCAATTAAAACAAGTCGTCGTTCAAGGGTTTCTAGAGAATTTATTGATGTAAAATATGCTTGCACAAGGTATGGAAAAAAGCGAGAATCCTCTGCAATTAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTTACTTGCATATAAAAAGAAAGTCTGATGGGAAATGGATTGTTCACGACTTCATTAAAGAGCACAATCATGTGCTTTTTCCAGCACATGCACATTATTTTCCTTGCCATAGACGAATTAATAAAGCTCAAAAGAGCTATATTGAAAATTTGCAACATGTCGGAGTGAGAACAACCAAAATTTATGCAACAATGGCCAAACAACATGGAGGGTATGAAAATATTGGTTGCTTGGAGAAGGACGTTAGAAATCATTTAGATAAAACTAGTCGTCTATCTTTAGAATCAGGAGATGCAAATGCAATGTTGGACTATTTTGTGGCTATGCAAGAagaaaatccaagatttttttatgcaattgaTTTGGATGAAGATAATCGTGTGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAGGATTATCAAGAGTTTGGAGATGTGATTTCATTTGATACAACATATATCACAAATAAGTACAAAATGTCATTTGCTCCTTTTATTGGCGTGAACAATCACTTTCAGTCACGATTACTTGGTTGTGCATTACTAGCAGATGAAACCTCAAATACTTTCATATGGTTGATGAAAACATGGCTTAGAGCAATGGGTGGAAATCCTCCAAATGCAATAATAACTGATCAAGACAAAGCGATGAAAGTGGCTATAAGAGAAGTATTTCCAAATACGCGGCATCGGTTTTGTCTATGGCATATACTTAGGAAGGTGCCTGAGAAGCTTAGTCATGTGTTACGAAAAAACGAAGACTTCAAGACACATCTCAACTCATGTATTTATAGGTCTTGGTCAAAGAAGCAATTTGAAGATAAGTGGCAAGAAATGGTAGAAAAGTTTCAACTGTTGGAGAATGAATGGATTCAGTCTTTGTATGAAGAACGTCAACACTGGGTTCCTGTTTACATGAAGGATACATTTTTTGGTGGCATGTCTACAACTCAGAGATCAGAGAGCATCAAttcattttttgacaaatatgtATGTAAGAAAACTACATTAAAGgaatttgttgaaaaatataaagttgCTTTGCATGATAGGGAGGAGGCAGAAATGCAAGCTGATTTTAATACATGGCACAAGCAACCTATACTTAAGACTCCATCACCTTTTGAGAAACAAATGTCTTTGATCTACACACATGAAGTcttcaagaaatttcaaatcGAAGTTTTGGGATTATCTGGATGTCGTCTTTTGAAAGAGAACAAGGATAGTCAAATTACTACTTTTGAAATCTTAGACTTTCAAAACAATGAAGAGTTTGTTGTAGAGTGGGATGcatcaaaaaatgaaatttcttgCTTATGTCGCTTATTTGTTCTTATTATAGCATGA 1692 0.3339 MEVVDENRELNIEGNREYVVDSHVNNDSHVSDSNADGNQEPYIGMEFASQENAHSFYVHYAKCVGFGISIKTSRRSRVSREFIDVKYACTRYGKKRESSAINPRPCLKVECEAYLHIKRKSDGKWIVHDFIKEHNHVLFPAHAHYFPCHRRINKAQKSYIENLQHVGVRTTKIYATMAKQHGGYENIGCLEKDVRNHLDKTSRLSLESGDANAMLDYFVAMQEENPRFFYAIDLDEDNRVKNVFWVDAKGREDYQEFGDVISFDTTYITNKYKMSFAPFIGVNNHFQSRLLGCALLADETSNTFIWLMKTWLRAMGGNPPNAIITDQDKAMKVAIREVFPNTRHRFCLWHILRKVPEKLSHVLRKNEDFKTHLNSCIYRSWSKKQFEDKWQEMVEKFQLLENEWIQSLYEERQHWVPVYMKDTFFGGMSTTQRSESINSFFDKYVCKKTTLKEFVEKYKVALHDREEAEMQADFNTWHKQPILKTPSPFEKQMSLIYTHEVFKKFQIEVLGLSGCRLLKENKDSQITTFEILDFQNNEEFVVEWDASKNEISCLCRLFVLIIA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02162 563 Coils Coil 383 403 - -
Tsu05g02162 563 Pfam MULE transposase domain 260 353 IPR018289 -
Tsu05g02162 563 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 558 IPR031052 GO:0006355
Tsu05g02162 563 Pfam FAR1 DNA-binding domain 55 140 IPR004330 -
Tsu05g02162 563 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 26 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02162 Tsu-Chr5 27277616 27279307 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu05g02162 MULE 2.8e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02162 - - dzi:111309578 806.594