Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02161 ATGGATGGGAACCCTAACTCTGCCGAACTTCTCCGCCAAGTTCAAGCAGCTCTCAAACGCCGCCGAAATCCCGGTGGTGCATTACAATCGAATATCATACGGCCAAAGCGTTCTTCTGTTGCTGAAGCAAAGGCCATGAACAAATCTGATGATTCTCAAACGAGTATTGATCAATTAGGAAACGATTTGCTTTCGCTTCGAAAGGGTAGTGAAGTTGTTGTTCCTGGAGaggAAATGGAGTGTTTGGCAAGCAGCCTACCTGAAGTATCAAATGGAATCAATCAAGACTTGAAGTACAAAACTATTCAGCAGGCAGAGtctgaaaaaagtttgatatcTGAAGGAGGCAAAATTTCTATGGTTCCAAGGAGAACAATAACTACTCAAGATCATGTGCATAAATTCAAAAACTTTTTAAGCCAACCAGCTACACAATCGTCGGTAGCTGGTCCTTCATGTGCAACAACTACATCAGTCCATTCAAGTTCAGCTCCAATGCTGAATTCTTTAACTGGTTCTTCTCATTCCCATCCAAATAGTGCCTCAAATTTGGTTACAAAACGTTGTGGGAACCTTAATCCTCATCCAATAACTCACGGGATTATTAAATCAGCAAATACTTCCCTAAAAGAAACCACTAGAATATCAACTGATCAAGCAACTACTGCAGTCCAAGCTTGTAGTTCACTTACTGATGCTGAATTGACGTTTAAGGAGAGCAACCCATCTAAGGAGCAGCTAGGATGCACTTTAAAGGAAACTAGCATTTCGAATCATGCTTCCTATAATGATGATGCATTAACTAAAGGCAAAGAGTCTGCAGTTGCTACCAACACACAACCTGAGGCTCCAACTGTATCTTCAGATGTGAAGTTGGAATCTTCAAAGTTAGttagtGGCAAACTATATCAAAGACTCGGAAGAATAGGTACTGGTGGAAGTAGTGAGGTACACAAAGTGATTTCATCAGACTGTACAATCTATGCGCTTAAAAAGATTAAGCTAAAGGGTCGTGATTATGCCACTGCATACGGATTTTGTCAAGAGATTGAGTATCTAAACAGGCTGAAAGGAAAAAGTAATATCATACAACTTATAGATTATGAGGTGACAGACAAGGCTTTGCTTGAAGGAGTCATGAGTGGCTCCTTCAACAATAAGGATGGTAGAGTCAAGGATGATGGATTTATATACATGGTACTTGAACATGGGGAAATTGACTTGGCTCATATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGTGCAACCAAACCATAGATGAAAACTGGCTTCGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATCCATGAGGAGCGTATTGTGCATTCTGACTTGAAGCCTGCAAATTTCCTCCTAGTCAAAGGTTCCctaaaattgattgattttggtATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAGCGGGATTCACAGGTTGGTactctaaattatatgtcaccaGAGGCATTTATGTGCAATGAGAGTGATGTGAATGGCAACATCATAAAGTGTGGTCGGCCATCCGATATCTGGTCCTTAGGCTGCATCCTTTATCAAATGGTATATGGAAGAACACCTTTTTCAGATTACAAGACATTTTGGGCCAAAGTCAAGGTCATAACTGATCCAAATCATCAAATTATGTATGAACCAGTTTCGAACCCATGGCTCGTCGATCTTATGAAGAAGTGTCTTGCATGGGATCGCAATGAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCTCCTCCAGTTTCATGCCATCCTTCTTTGTCCCAAGACAATACCTTTAAATGGCTGCAACTTATTGCTGAAACCTGTACATGTGACCAAGAAGCATCACATCTTTGTTATCAGCTGCAACAGGTGCTTGGTGACCCCTTTAAATTAATAACTCCTGACACAATGAATTCGCGAGACGGACAGCGTAAAATTCTGTCCTGCATATCAGAACTCTGTGTTCAGCTGCATGAACGATTAACAGATTCTGATAACAAATAA 2046 0.3978 MDGNPNSAELLRQVQAALKRRRNPGGALQSNIIRPKRSSVAEAKAMNKSDDSQTSIDQLGNDLLSLRKGSEVVVPGEEMECLASSLPEVSNGINQDLKYKTIQQAESEKSLISEGGKISMVPRRTITTQDHVHKFKNFLSQPATQSSVAGPSCATTTSVHSSSAPMLNSLTGSSHSHPNSASNLVTKRCGNLNPHPITHGIIKSANTSLKETTRISTDQATTAVQACSSLTDAELTFKESNPSKEQLGCTLKETSISNHASYNDDALTKGKESAVATNTQPEAPTVSSDVKLESSKLVSGKLYQRLGRIGTGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKSNIIQLIDYEVTDKALLEGVMSGSFNNKDGRVKDDGFIYMVLEHGEIDLAHMLSQKWKELDGCNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLNYMSPEAFMCNESDVNGNIIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPNHQIMYEPVSNPWLVDLMKKCLAWDRNERWRIPQLLQHPFLAPPVSCHPSLSQDNTFKWLQLIAETCTCDQEASHLCYQLQQVLGDPFKLITPDTMNSRDGQRKILSCISELCVQLHERLTDSDNK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02161 681 MobiDBLite consensus disorder prediction 268 288 - -
Tsu05g02161 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Tsu05g02161 681 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Tsu05g02161 681 Gene3D Phosphorylase Kinase; domain 1 297 382 - -
Tsu05g02161 681 Gene3D Transferase(Phosphotransferase) domain 1 418 601 - -
Tsu05g02161 681 MobiDBLite consensus disorder prediction 144 182 - -
Tsu05g02161 681 ProSiteProfiles Protein kinase domain profile. 303 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02161 681 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 30 642 IPR027084 GO:0004712|GO:0007093|GO:0051304
Tsu05g02161 681 SUPERFAMILY Protein kinase-like (PK-like) 301 604 IPR011009 -
Tsu05g02161 681 SMART serkin_6 303 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu05g02161 681 PANTHER MIXED LINEAGE PROTEIN KINASE 30 642 - -
Tsu05g02161 681 MobiDBLite consensus disorder prediction 272 288 - -
Tsu05g02161 681 CDD PKc_Mps1 301 596 - -
Tsu05g02161 681 Pfam Protein kinase domain 303 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02161 Tsu-Chr5 27265485 27271435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02161 304 596 MAP Kinase Kinase Gene Family AT3G21220 28.289 6.99e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Tsu05g02161 Pkinase 4.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02161 K08866 - gmx:100816674 949.503