Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02128 ATGAACTCTTCATCATTATCAACTCAACTAATCGCGCCGAAAAGGATGGACATATTTGAGCCATTCCATCAATTGAGCATGTGGGAGGATAGCTTTAAAGTTGATCATAGCACCCTTAATTCAATTGCTTCCCCAATGTTGAAGATGAACATTAGTAGCTTGGAGAACAAGTCTGAATATATTTCTCATGAATCAAGAGAACCTTCTGGAGATGATCAAGAAACTACTGAAGAACCTGTTCCTAAGGTGCTACGACGTCAAGCACAAAATCGCGAAGCTGCTAGGAAATGTCGACTGCGAAAGAAGgCTTATGTTCAACAACTGGAAACAAGTAGATTAAAGCTTATGCAATTGGAACTTGAGATTGAGAAAACAAGAAAACAGGGTTTGTACAGAAGCAATTCATTTGATGTCAGTTATATGAGATCATCTGGAATAATAAACTCAGCAGGGATATctttatttgaaattgaatatgGACGTTGGATTGAAGAGCAAGATAGACAAAATGAAGAACTAAGAAATGCATTGcaaattaatgtatctaatctACAACTTCATCTACTTGTTGAGAGTAGCTTGAATCAATACTCAAATCTTTTTAGAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGCATGGAAATCACCGGTAGAACGCCTTTTTCTTTGGATTGGAGGATCTCGTCCGTCACAGATTCTAAATATCATCGTACCCAAGCTTGAGGCTTTAACTGATCAACAAATTGCGAGCATTAACAACCTACGATTATCCTCTCAGCAAGCCGAAGATGCTCTTTCAATAGGGTTGGAGAAACTCCAGCAAAGTATGATCCACAACATTCAAGCTGATCCCTTGGATTTCGGAAACTACGGATTTCAGATGGCTTCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTCATCcagGCAGATCACCTTAGGCAACAAGCTTTGTTGTACATGTCTCGTATCTTAACAATCGGGCAATCAGCTCGTGGCTTGCTGGCTATGGGGGAATACTTTCAACGTCTTCGCACTCTTAGTTTGTTGTGGACTGCTCATTCATGTGATCAATTCTACCCTACTCAACACTCAAATTGA 1125 0.3867 MNSSSLSTQLIAPKRMDIFEPFHQLSMWEDSFKVDHSTLNSIASPMLKMNISSLENKSEYISHESREPSGDDQETTEEPVPKVLRRQAQNREAARKCRLRKKAYVQQLETSRLKLMQLELEIEKTRKQGLYRSNSFDVSYMRSSGIINSAGISLFEIEYGRWIEEQDRQNEELRNALQINVSNLQLHLLVESSLNQYSNLFRMKAEAAKADVFYLISGAWKSPVERLFLWIGGSRPSQILNIIVPKLEALTDQQIASINNLRLSSQQAEDALSIGLEKLQQSMIHNIQADPLDFGNYGFQMASAMDKGEAVEGFVIQADHLRQQALLYMSRILTIGQSARGLLAMGEYFQRLRTLSLLWTAHSCDQFYPTQHSN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02128 374 MobiDBLite consensus disorder prediction 59 88 - -
Tsu05g02128 374 Pfam bZIP transcription factor 82 111 IPR004827 GO:0003700|GO:0006355
Tsu05g02128 374 PANTHER FACTOR TGA7, PUTATIVE-RELATED 16 365 - -
Tsu05g02128 374 Coils Coil 101 128 - -
Tsu05g02128 374 PANTHER TRANSCRIPTION FACTOR TGA9 16 365 - -
Tsu05g02128 374 SMART brlzneu 78 142 IPR004827 GO:0003700|GO:0006355
Tsu05g02128 374 Gene3D - 82 133 - -
Tsu05g02128 374 SUPERFAMILY Leucine zipper domain 84 115 IPR046347 GO:0003700|GO:0006355
Tsu05g02128 374 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Tsu05g02128 374 Pfam Seed dormancy control 171 244 IPR025422 GO:0006351|GO:0043565
Tsu05g02128 374 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 85 100 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02128 Tsu-Chr5 26179362 26182566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02128 1 359 Calmodulin-binding Proteins AT5G65210 50.964 4.90e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu05g02128 DOG1 8.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02128 K14431 - gmx:100775882 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02128 05 26179362 26182566 Tsu03g02055 03 21639628 21657226 PCT