Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02117 ATGTCTCCTCCTCAACCATGCCCTGTCCACCCCAAAATCTGGCAATCATTTGCCGGCCCCGCCGTCACCATTCCCAAACTTCACTCTAAAGTTTACTACTTCCCACTAGGTCACTTGGAACACGCCTGCCCTTTTCCTAACCCTAACACAATCTCCATTCTTGATAATCAACGTCCTTATATTCCATGCATCATCTCCGCCGTTAATCTCCTTTCCGATCCTCACACCGATGAGGTGTTCGCCAAACTGATCTTAACTCCAATAACTGACACCCATGTCCAAGAATCTCCCGCCCAAGAAGACGACGGAGACAAAGTTCTTTCTTATATCAAGATTCTAACGCAGTCTGATTCAAATAACGGTGGTGGATTCTCCGTACCTCGCGAATGCGCTGACTTGATCTTCCCTGAGCTTGACTTTACGGATCCAATGCCATCTCAACAACTCTACGTCAACGACGTTCAAGGTGGTGTCTGGAAATACACTCATGTCTACCGTGGGAAACCTAAGAGACACTTGTTTACTACCGGCTGGACTCCGTTTGTTAACGGGAAAAAACTAGTTGCAGGAGATACCGTCGTTTTCTTGAAATATTCCACTGGAAATATATTTGTAGGTATTCGCCGAAACATGAAGTTTGCTGCAGCACCACAGAAGAAAGACGAGGAGGGTGAAGAGAAGGTTGAGGGGTTTTCGAGGAATGGAAAAAGAGGGAATGTAACTGAGAAGGCGGTTATAGAGGCGGTGGAACTGGCGGAGAAGAACATGGCATTCGAAGTTGTATATTACCCGACTCCTAATTGGAGTGATTTTGTGGTAGAAGCTAAGGTTGTGGATGAGGCTATGAAGATTGGTTGGCAATCTGGAATGAGAGTTAAACTTGTTTTGAAGAAAGAGGAATGTTCAAAGAAGCCATTGTGTCAGCCTCAAGGTTCAATCTCAAATGTCTCTATTGTCCCTACTTGGCGCATGCTTAAGATTAACTGGGATGAACCTGAAATCTCGCAATACCCAAACTGTGTGAATCCTTGGCAGGTTGAACTTATTTCTCAGGCACCTGCATTGTATCTACCACTCTTCCAAACAAAAAGGCCTAGACTTACAGAGAGAGACCCCTTCATTCCTATGATAGAATTTCCTTATTCAACAATGGGATCCTTGAACCAAACATTGTTGAATCGCGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCATTTATCAGCTGCATCAAGTTCTTCCAACCTCTTGAGTTATAATGGCTATGGTTTACTTGTGAACAGTATAATGGCAGGGTTGACTACTATGCCAAAAGAGGTAAACATCGGAAGTTCTACATCTTCGTCCCCTCATAACAACTTCGTGACAAATTTCGTTGAAACTCACAATGATAACACAAAAAGAGTTAGGCCTAGTTCAATTAAACTATTTGGTAAGATCATACACACTGTTGAAAGTGATTTTGATGAATCTGGTATTAAGGGATCAGAGGATGGTTCTAATGGGGAGGATGGTTCTAATGGAGGATCCAGTGAAATTGAAGGTGTTGATAAAACTTGCACAACAAATTAA 1578 0.4328 MSPPQPCPVHPKIWQSFAGPAVTIPKLHSKVYYFPLGHLEHACPFPNPNTISILDNQRPYIPCIISAVNLLSDPHTDEVFAKLILTPITDTHVQESPAQEDDGDKVLSYIKILTQSDSNNGGGFSVPRECADLIFPELDFTDPMPSQQLYVNDVQGGVWKYTHVYRGKPKRHLFTTGWTPFVNGKKLVAGDTVVFLKYSTGNIFVGIRRNMKFAAAPQKKDEEGEEKVEGFSRNGKRGNVTEKAVIEAVELAEKNMAFEVVYYPTPNWSDFVVEAKVVDEAMKIGWQSGMRVKLVLKKEECSKKPLCQPQGSISNVSIVPTWRMLKINWDEPEISQYPNCVNPWQVELISQAPALYLPLFQTKRPRLTERDPFIPMIEFPYSTMGSLNQTLLNRDTFPAGMQGARHDHLSAASSSSNLLSYNGYGLLVNSIMAGLTTMPKEVNIGSSTSSSPHNNFVTNFVETHNDNTKRVRPSSIKLFGKIIHTVESDFDESGIKGSEDGSNGEDGSNGGSSEIEGVDKTCTTN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02117 525 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Tsu05g02117 525 PANTHER AUXIN RESPONSE FACTOR 6 508 - -
Tsu05g02117 525 Gene3D - 106 211 IPR015300 -
Tsu05g02117 525 SUPERFAMILY DNA-binding pseudobarrel domain 104 209 IPR015300 -
Tsu05g02117 525 MobiDBLite consensus disorder prediction 490 525 - -
Tsu05g02117 525 CDD B3_DNA 108 209 IPR003340 GO:0003677
Tsu05g02117 525 Pfam Auxin response factor 248 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu05g02117 525 Pfam B3 DNA binding domain 110 210 IPR003340 GO:0003677
Tsu05g02117 525 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 508 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu05g02117 525 MobiDBLite consensus disorder prediction 502 525 - -
Tsu05g02117 525 Gene3D - 286 353 - -
Tsu05g02117 525 SMART B3_2 109 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02117 Tsu-Chr5 26062884 26064978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02117 1 508 B3 DNA Binding Superfamily AT1G77850 39.184 1.85e-114 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu05g02117 B3 1.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02117 - - cam:101503141 479.559