Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02109 ATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTTACGATTGGTAAACCTGTTGTGACAAAGATTGTCACTCCCACTTCAAGCCAAACTAAAATAAATGCTTTGTCTGATATTGAAGTTCTGAGGTTAGCAGCTGCTGTCGAATCAAATTCAGTACATCCAGTTGGGAAAACAATTGTGGATGCTGCTCAGGCAATTAATTGTCATGACGCTAAGGTAGCAGATGAAACATTCCTGGAAGAACCTGGATTTGGTGTTGTTGCAACcgtaaataataaaaaggttTCGGTTGGGACATTGGAATGGATAACCAGGCATGGAGTTAACAACAGTATACATCAGGAGGTGGAGTGTAAAAACCAATCCTTTGTCTATGTTGGAGTTGATGACACTTTGGCTGGCCAGATTTATTTTGAAGATGAGATAAGGAAAGATGCAAGACATGTTGTTGACACCTTATCTAAGCAAGGTATTGATATCTACATGCTGTCTGGAGACAAAAGGAATGCAGCTGAGTATGTTGCATCTCTTGTTGGGATTCCCAAAGCAAAGGTGCTATCTGAAGTGAAACCAGAGGAGAAAAACAAGTTCATAAAGGAACTTCAGAAAGATAAGAAAGTTGTAGCTATGGTTGGTGATGGAATTAATGATGCAGCTGCGCTGGCTTCTTCACATATAGGTATTGCATTGGGTGGAGGTGTTGGAGCTGCTAGTGAGGTGTCTTCCATTGTATTGATGCACAACCATCTCTCACAGCTGCTTGATGCATTGGAACTTAGCAGGCTAACCATGAATACTGTAAAGCAAAATCTTTGGTGGGCTTTCGTATACAATATTGTAAGTTGTGCTGCTGTCCAGATATAA 867 0.4025 MVNTVVFDKTGTLTIGKPVVTKIVTPTSSQTKINALSDIEVLRLAAAVESNSVHPVGKTIVDAAQAINCHDAKVADETFLEEPGFGVVATVNNKKVSVGTLEWITRHGVNNSIHQEVECKNQSFVYVGVDDTLAGQIYFEDEIRKDARHVVDTLSKQGIDIYMLSGDKRNAAEYVASLVGIPKAKVLSEVKPEEKNKFIKELQKDKKVVAMVGDGINDAAALASSHIGIALGGGVGAASEVSSIVLMHNHLSQLLDALELSRLTMNTVKQNLWWAFVYNIVSCAAVQI 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02109 288 PRINTS P-type cation-transporting ATPase superfamily signature 6 20 - -
Tsu05g02109 288 PRINTS P-type cation-transporting ATPase superfamily signature 212 231 - -
Tsu05g02109 288 PRINTS P-type cation-transporting ATPase superfamily signature 157 167 - -
Tsu05g02109 288 PRINTS P-type cation-transporting ATPase superfamily signature 235 247 - -
Tsu05g02109 288 SFLD p-type atpase 2 262 IPR044492 -
Tsu05g02109 288 PRINTS H+-transporting ATPase (proton pump) signature 184 200 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g02109 288 PRINTS H+-transporting ATPase (proton pump) signature 212 228 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g02109 288 PRINTS H+-transporting ATPase (proton pump) signature 243 268 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g02109 288 SUPERFAMILY HAD-like 4 283 IPR036412 -
Tsu05g02109 288 Pfam haloacid dehalogenase-like hydrolase 2 224 - -
Tsu05g02109 288 ProSitePatterns E1-E2 ATPases phosphorylation site. 8 14 IPR018303 -
Tsu05g02109 288 PANTHER ATP7, ISOFORM B 2 281 - -
Tsu05g02109 288 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 49 283 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu05g02109 288 SFLD Haloacid Dehalogenase 2 262 - -
Tsu05g02109 288 Gene3D - 2 262 IPR023214 -
Tsu05g02109 288 Gene3D - 17 143 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02109 Tsu-Chr5 25790490 25795451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02109 2 281 Primary Pumps ATPases AT1G63440 36.770 2.96e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02109 K17686 - gmx:100796210 444.506