Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02104 ATGGGTCGTGTTAAACttgagataaaaagaatagAGAATACAACAAATCGACAAGTTACATTTTCAAAGCGAAGAAATGGCCTCATAAAAAAAGCTTATGAGTTATCAATTCTTTGTGATATTGATATTGCCCTTATAATGTTTTCCCCATCAAATCGTCTTAGTCATTTTTCGGGTAAAAAAAGGATAGAGGATGTTTTAACTCGTTACATTAATCTTCCTGACAATGAAAGAGATAAGTATTATTTAATCAGGACGCTTCAGCAATTGAGAAGTGAAAATGACATAGCTCTTCACATGTCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAGTAGGTTACAACAACAACTTCAAATGGCAGAGGAACAGATAAGGATATACGAACCCGAACCATTAAAGATGGCATCTATGGCAGAGCTTGAAACCAGTGAAAAAAACGTTGTAGAAACCTTGGCACGTGTCATGCAGAGAAAGGAACTTTTATTGAACAACCAACTATCTTCATATGATCCATCTGGTATTCAGGGGATGCCGACATCATTCGAGAATGTAGGTTGGTTACAGGATGGTAGTCAAAATCATCCGCATATGTTTGATGCATCCGCTCCTTTGGATCCTCTCAGGGATTTGTCTTCTACTGTGTACGGTTCATTTTCACAAGGGACGACTTCAAATGTTGACCAAAGAGGAATAGGAGAGTGCCACGTAGCAAACCCAAATGATGGAAACCTTCAAGCATGGCCTCAAGGATACACATTATatcctcaacaacaacaacaacaccaacatcatcatcatcatcatcatattcaaCATGACATGGTTGGAAcagatcatcatcatcaccacaaTATTCAAGATATAATGCCACATGGACAAATTAACATGCCAATCACTGCCTCACAAGTTGAACCACCTAAAAATGAATCAACGGATCAATATGATCAATGTAAACAACCTAATCATCAGCTTCATGCTCAATGA 1005 0.3493 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFSGKKRIEDVLTRYINLPDNERDKYYLIRTLQQLRSENDIALHMSNPGDINSEIEELQQEVSRLQQQLQMAEEQIRIYEPEPLKMASMAELETSEKNVVETLARVMQRKELLLNNQLSSYDPSGIQGMPTSFENVGWLQDGSQNHPHMFDASAPLDPLRDLSSTVYGSFSQGTTSNVDQRGIGECHVANPNDGNLQAWPQGYTLYPQQQQQHQHHHHHHHIQHDMVGTDHHHHHNIQDIMPHGQINMPITASQVEPPKNESTDQYDQCKQPNHQLHAQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02104 334 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Tsu05g02104 334 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 259 - -
Tsu05g02104 334 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 Coils Coil 110 137 - -
Tsu05g02104 334 MobiDBLite consensus disorder prediction 309 334 - -
Tsu05g02104 334 MobiDBLite consensus disorder prediction 264 286 - -
Tsu05g02104 334 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu05g02104 334 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Tsu05g02104 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 259 - -
Tsu05g02104 334 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Tsu05g02104 334 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02104 Tsu-Chr5 25526872 25539115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02104 1 307 Type I MADS-box Gene Family AT1G22130 52.568 7.82e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu05g02104 SRF-TF 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02104 - - gmx:100305913 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02104 05 25526872 25539115 Tsu05g02104 05 25526872 25539115 ECH