Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02096 ATGAGTCATCCAGCTGATGAAAATGTTGAAACAAAAGAGATGGATAGTAGAAGTTTGTCTTCTTCACAAGGCCAGGAACCATACGTGCACAAGGTTGGAGTTCCTCCAAAACAAAACCTCTTTAAGGAATTCCAATACACAGTAAAGGAAACATTTTTCTCGGACGATCCTCTACGGCCTTTTAAGGACCAGACGAAGTCCCGGAAGTTCATCCTGGGAATTGAAGCTATATTCCCTATACTTGGTTGGGGAAGAACTTATAACCTCAAAAAGTTTAGAGGAGATCTTATTGCCGGTTTAACTATTGCAAGTCTCTGCATTCCTCAGGATATTGGATACGCAAAGCTTGCAAATTTGTCTCCTCAGTATGGACTGTATTCAAGCTTTGTTCCACCACTGATATATGCGGTCATGGGTAGTTCACGTGACATTGCGATAGGACCAGTGGCAGTGGTGTCTCTCTTGTTGGGGACTTTACTTCAGAATGAGATTGATCCCAATACAAATCCAACAGAATATAGAAGACTCGCTTTTACTGCCACGTTTTTTGCTGGGATTACACAGGCAACTCTTGGAGTTTTTAGGTTAGGATTTTTGATTGATTTCCTATCTCATGCTGCAATTGTCGGTTTTATGGGTGGAGCTGCCATTACAATTGCTCTACAACAGCTTAAGGGTTTCCTTGGGATTGAAAAGTTCACAAGGAAAACCGATATAATCTCTGTGATGCATTCAGTATTCTCATCAGCCCATCATGGGTGGAACTGGCAAACTATATTAATTGGATCTACcttcctttcttttcttctgTTTGCCAAGTATATCGGAAAGAAGGGCCCAAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCTGTTGTACTCTCCACTTTTTTTGTATACATAACCCGTGCAGACAAACATGGTGTTGCAATTGTAAAACACATAGAGAAAGGGATAAATCCATCCTCCGTGAAGGAAATTTATTTTACTGGTGACTACCTTGCGAAAGGTGTTAGAATTGGCATTGTCGCTGGCATGATAGCTTTAACTGAAGCCATAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACATCCTGTTATGTAGCAACCGGTTCTTTCTCTCGGTCAGCAGTAAATTTTATGGCTGGCTGCGAAACTGCGGTCTCTAATATCTTCATGTCTATTGTTGTGTTCTTAACCCTGCAATTTATCACGCCTCTTTTCAAATACACTCCAAATGCCATTCTTGCTTCAATCATCATTTGTGCCGTCATCAACCTTGTAGACTATAAGGCAGCAATTTTGATATggaaaattgataaatttgacTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTCGTTTTTGCCTCGGTTGAGATAGGACTTTTGATTGCTGTTTCTATATCCTTTGCAAAAATCTTATTGCAAGTCACGAGGCCCCGAACTGCTATTCTGGGGAAGATCCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCAGAGGCAACAAGGGTTCCTGGTGTACTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCTAATTATGTTAAAGAAAGGATACTAAGATGGCTTATGGATGAGGAAGAACGAGTGAATAGAGACTACCAAACCCGAATCCAATTTTTGATAGTTGAGATGTCACCTGTTACTGACATTGATACTAGTGGCATCCATGCCCTGGAAGAGTTATTTAGAAGTCTTCAGAAAAGAGAGGTTCAGCTTGTACTTGCAAATCCTGGTCCACTAGTGATAGACAAACTCCACACATCCAACTTTGCAAATTTTCTTGGTGAAGACAAGATCTTCCTCACTGTTGCTGAGGCTGTTGCATACTGTTCTCCAAAGCTAGCTGAGGAACCTTGA 1968 0.4004 MSHPADENVETKEMDSRSLSSSQGQEPYVHKVGVPPKQNLFKEFQYTVKETFFSDDPLRPFKDQTKSRKFILGIEAIFPILGWGRTYNLKKFRGDLIAGLTIASLCIPQDIGYAKLANLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLQNEIDPNTNPTEYRRLAFTATFFAGITQATLGVFRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIEKFTRKTDIISVMHSVFSSAHHGWNWQTILIGSTFLSFLLFAKYIGKKGPKFFWVPAIAPLISVVLSTFFVYITRADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIFMSIVVFLTLQFITPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQLVLANPGPLVIDKLHTSNFANFLGEDKIFLTVAEAVAYCSPKLAEEP 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02096 655 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Tsu05g02096 655 SUPERFAMILY SpoIIaa-like 526 648 IPR036513 -
Tsu05g02096 655 ProSiteProfiles STAS domain profile. 524 647 IPR002645 -
Tsu05g02096 655 CDD STAS_SulP_like_sulfate_transporter 525 640 - -
Tsu05g02096 655 PANTHER SULFATE TRANSPORTER 12 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu05g02096 655 TIGRFAM sulP: sulfate permease 79 643 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu05g02096 655 Gene3D STAS domain 504 651 IPR036513 -
Tsu05g02096 655 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 12 655 - -
Tsu05g02096 655 Pfam Sulfate permease family 92 472 IPR011547 GO:0016021
Tsu05g02096 655 Pfam STAS domain 525 643 IPR002645 -
Tsu05g02096 655 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02096 Tsu-Chr5 25182754 25187141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02096 2 654 Inorganic Solute Cotransporters AT1G22150 78.714 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02096 K17470 - gmx:100797668 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02096 05 25182754 25187141 Tsu05g02096 05 25182754 25187141 ECH
Tsu05g02096 05 25182754 25187141 Tsu03g02078 03 21924252 21929463 PCT