Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02048 ATGGCCAAAAAACTTTTGAATATTCCATATAGAAGATCATTCTCCTCTGAAACTCCATCTCTTTACTCATTCCTTCAACCTTGTTTGTTttccatcaacaacaacaacaaatctcaTGATGAAGAACCCCAAAATCTCCCAACTTCACCACCACACTCACTCTCCCTCACACCCCACCAACTAACCACTCTTCAAACTACACTCCACAAATCCCTTATCACTACCCAAACTGATGAAGCTTGGAAATCCTTCAAAACCCTCACTACCCACCATTCCTTCCCTCCTAAACCCCTCACCAATTCACTCCTCACCCACTTATCCTCCCTTGGCGACATTCACAATCTCAAAAGAGCTTTTGCATCTACCATCTTTCTCATTGAAAAGAATCCCAACCTTCTCAATTTCGATACAATCCATACCATGCTTCTTTCCATGAACTCTGCCAACACTGCTTCCCCTGCTTTTGCacttgttaaaacaatgttCAAAAACAGATTTTTTATCCCTTTTCATTCGTGGGGCGGTGTGCTCGTTGATATTGCTAGAAACAATCACAACCTTGCTGCTTTCTTGCCTCTTTTTGAAGAGAACTGCAGGGTTGCTTTCGATGAGAAGATTGATTTCATGATGCCTGATGTTTCTGCTTGTAATGCTGCTCTTGAAGCTTGCTGTGTTCACCTTGAATCGGTAACTGATGCTGAGAGAGTTGTTGGAATAATGTCAAATCTTAGTGTCAAACCTGATGAGTTTAGTTTTGGATTTCTTGCTTATTTATATGCACTTAAAGGGTTACAAGATAAGATAGATGAGTTAAAACTTTTGATGAGTGGTTTTGGTTActcaaaaaacaataaatgcTTTTATTCTAATTTGATTAGTGGGTATGTTAAGTCTGGTAATTTAGCTTTTGTGGAATTGACTATTATCAGTAGTCTGAATGATAGAGATGGAGGCGGAGATGGAGGAGTTTGGAATTTTGATAGACACACTTTTTGTGTAGTAGTTAAGGAATATCTTCAGAAGGGAAATATTAAGGGTTTAGCTAATTTGGTTATTGAAGCTCAGAAATTAGAGTCTTCAAATATCAAAGTTGAAGAGTCTATTGGTTTTGGTATTGTTAATGCATGTGTTAGTATTGGACTGTCAGATAAAGCACACAGTATTCTTGATGAAATGAATGCGTTGGGAGGCTCCGTGGGTCTTGGGGTCTATGTACCGATCTTGAAGGCTTACTGCAAAGAAAATCGAACTGCTGAGGCTACTCTATTGGTCGTGGAGATTAGTAGTTCAGGTCTTCGGTTGGATGCAGAAACCTATGATGCTCTGATAGAAACGTCCATGTCCGGTCAAGACTTTCAGTCTGTCTTTTCTCTGTTTAGGGACATGAGAGAGGCGAGGATTCTTGATTTGAAAGGGAGTTACTTGACTATAATGACAGGTTTGATGGAGAATAATCGACCTGAGTTGATGGCAGCtttcttagatgaagtggttgaGGATCCTCGTATTGAAGTTGGTACTCATGATTGGAATTCTATAATCCATGCTTTTTGTAAAGCTGGGAGACTAGAAGATGCACGGAGGACTTTCAGAAGGATGGCATTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCACTGATTAACGGATATGTTTCGGCACAGAAATATTTTGATGTAATGATGTTGTGGAATGAGGTTAAGCGCAAGTTATTGGTGGATGGACCGAAGCAGATCAAATTTAACCAAAATCTGGTTGATGCATTCCTGTACTCTATGGTCAAGGGAGGTTTCTTTGATGCTGTGATGCAAGTCGTGGAGAAATCTAAAGAGatgaaaatatttgttgatAAGTGGAGATACAAACAAGCATTCATGGAGACCCATAAAAAGCTCAAAGTGGCCAGGTTACGAAAAAAGAATATTAAGAAAATGGAAGCGCTTATTGCTTTCAAGAATTGGGCTGGCTTAAATGCGTGA 1983 0.3802 MAKKLLNIPYRRSFSSETPSLYSFLQPCLFSINNNNKSHDEEPQNLPTSPPHSLSLTPHQLTTLQTTLHKSLITTQTDEAWKSFKTLTTHHSFPPKPLTNSLLTHLSSLGDIHNLKRAFASTIFLIEKNPNLLNFDTIHTMLLSMNSANTASPAFALVKTMFKNRFFIPFHSWGGVLVDIARNNHNLAAFLPLFEENCRVAFDEKIDFMMPDVSACNAALEACCVHLESVTDAERVVGIMSNLSVKPDEFSFGFLAYLYALKGLQDKIDELKLLMSGFGYSKNNKCFYSNLISGYVKSGNLAFVELTIISSLNDRDGGGDGGVWNFDRHTFCVVVKEYLQKGNIKGLANLVIEAQKLESSNIKVEESIGFGIVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEATLLVVEISSSGLRLDAETYDALIETSMSGQDFQSVFSLFRDMREARILDLKGSYLTIMTGLMENNRPELMAAFLDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMAFLQFEPNDQTYLSLINGYVSAQKYFDVMMLWNEVKRKLLVDGPKQIKFNQNLVDAFLYSMVKGGFFDAVMQVVEKSKEMKIFVDKWRYKQAFMETHKKLKVARLRKKNIKKMEALIAFKNWAGLNA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02048 660 Pfam PPR repeat family 510 553 IPR002885 -
Tsu05g02048 660 Gene3D Tetratricopeptide repeat domain 107 278 IPR011990 GO:0005515
Tsu05g02048 660 PANTHER BNAC05G43320D PROTEIN 11 660 - -
Tsu05g02048 660 MobiDBLite consensus disorder prediction 35 54 - -
Tsu05g02048 660 Pfam Pentacotripeptide-repeat region of PRORP 353 465 IPR033443 -
Tsu05g02048 660 PANTHER OS01G0788900 PROTEIN 11 660 - -
Tsu05g02048 660 TIGRFAM PPR: pentatricopeptide repeat domain 510 541 IPR002885 -
Tsu05g02048 660 Gene3D Tetratricopeptide repeat domain 468 623 IPR011990 GO:0005515
Tsu05g02048 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Tsu05g02048 660 Gene3D Tetratricopeptide repeat domain 331 467 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02048 248 573 Miscellaneous Gene Families AT4G11690 23.582 6.53e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02048 - - mtr:MTR_5g044930 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g02048 05 24235912 24237894 Tsu05g02048 05 24235912 24237894 ECH