Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02045 ATGTCGAGCGGAAAGAAAAGCCGAGGTCGCCAAAAGGTGGAAATGAAAAGGATGACCGTTGAGAGTAACTTACAAGTAACATTTTCGAAGCGCCGTAATGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGTTGATGTTGCACTTGTTATATGTTCACCTGGTGAAAAGGTATATTCCTTCGGTCACCCCAATGTTGATACGATCATAGATCGTTATCTCGCACCTGTCCCACATCAAAATAATGGAACCATGCGATTCATCGAGGCTCAACGTAGTGCCAACATTCATGAGCTCAATTCCCGACTGACACTAACCAACAACATGTTGGATGTCGAGAATATGCGTAGGGGTGAACTGAGTCAAATTCTCAATGTGATCGAGACTCAGTATTGGTGGGCTCGTCCTGTCGATGGGATGAATTTGGATCAACTTGAGTTTTTGACAAAACTTTTGATGAATCTGAAGAATCTTATCGCTCAATATACTAATAGGCATGAAATCCAGGGTGCTCCTGTCCAAACCCTACCATTTTTCGGTGGAGATGGTTTATGCTCTAACTCGCATGTCCATCATCAACCAAATCCTCAACAAGATCAAGCttttctaccattttttgaTGGTAATGGTTCTTCTTCTAACATGCATGTAATTCAGGGTGCTCCTACTCAAACCCAACCATTTTTTGGTGGAAATGGTGCATCTTCTAACTTGCCTCTCCATCATCCACCAAATCCTcagcaaaatcaaaatttttcgGCACAATTGTTTGAGAACGCTATGTTGCAACCACATTTATTTCGCTTCAACAATATGGGAGGAGGAGAACGAGGATATGGCCCTTCTGGATTCTCTTGA 867 0.4141 MSSGKKSRGRQKVEMKRMTVESNLQVTFSKRRNGLFKKASELCTLCGVDVALVICSPGEKVYSFGHPNVDTIIDRYLAPVPHQNNGTMRFIEAQRSANIHELNSRLTLTNNMLDVENMRRGELSQILNVIETQYWWARPVDGMNLDQLEFLTKLLMNLKNLIAQYTNRHEIQGAPVQTLPFFGGDGLCSNSHVHHQPNPQQDQAFLPFFDGNGSSSNMHVIQGAPTQTQPFFGGNGASSNLPLHHPPNPQQNQNFSAQLFENAMLQPHLFRFNNMGGGERGYGPSGFS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02045 288 PANTHER MADS BOX PROTEIN 7 180 - -
Tsu05g02045 288 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tsu05g02045 288 Coils Coil 148 168 - -
Tsu05g02045 288 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu05g02045 288 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu05g02045 288 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu05g02045 288 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu05g02045 288 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Tsu05g02045 288 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu05g02045 288 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Tsu05g02045 288 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 180 - -
Tsu05g02045 288 MobiDBLite consensus disorder prediction 233 253 - -
Tsu05g02045 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02045 Tsu-Chr5 24167764 24168630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02045 5 168 Type I MADS-box Gene Family AT5G60440 49.102 9.51e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g02045 SRF-TF 5.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02045 - - mtr:MTR_1g106070 247.669