Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g02015 ATGTCGAGCGGAAAGAAAACCCAAGGTCGCCAAAAGGTCGAGATGAAAATGATGACCAAAAGGAGCAACATGCAAGTGACTTTTTCGAAGCGCCGTAACGGGCTCTTCAAGAAAGCTAGCGAGCTTAGCACTCTTTGTGGTGCTGATGTggctcttgttttattttcaccTGGTCAAAAGGTATATTCCTTTGGTCACCCTAATGTTAATACGGTCATAGATCGTTATCTCTCACAGGTTCCACATCAAAACAGTGGAACCATGCAATTAATTGAGGCGCAACGTAGTGCTAACGTTAGTGAGCTCAATTCTCGGTTGACACAAATCAACAACATATTAGACTTTGAGAAGAGGGGTATGGATGAGCTCAGTCAAATTCACAGTATGATTGAGGCTCAATATTGGTGGGCTCGTCCCTATAATGGGATGAATTGGGATCAACTTGAATTTatgaaaaacaatttggagaaTTTGAAGAATCTTATTGCTCAACATGCTAATAGGCATGTAATTCAAGGTGCTCCTACCCAAACCCTTCAATTTTTTGATGGAAACACTTCATCCTCTACTATGTCTGTCCATCATCATCCAAATTCCCAACAACGTCAGATGTTTGTGGCACAACCTATTCAGAACCCTATGTAA 645 0.3922 MSSGKKTQGRQKVEMKMMTKRSNMQVTFSKRRNGLFKKASELSTLCGADVALVLFSPGQKVYSFGHPNVNTVIDRYLSQVPHQNSGTMQLIEAQRSANVSELNSRLTQINNILDFEKRGMDELSQIHSMIEAQYWWARPYNGMNWDQLEFMKNNLENLKNLIAQHANRHVIQGAPTQTLQFFDGNTSSSTMSVHHHPNSQQRQMFVAQPIQNPM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g02015 214 PANTHER MADS BOX PROTEIN 7 203 - -
Tsu05g02015 214 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Tsu05g02015 214 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 203 - -
Tsu05g02015 214 Coils Coil 148 168 - -
Tsu05g02015 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu05g02015 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu05g02015 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu05g02015 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu05g02015 214 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu05g02015 214 Gene3D - 88 171 - -
Tsu05g02015 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 64 IPR002100 GO:0003677|GO:0046983
Tsu05g02015 214 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Tsu05g02015 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g02015 Tsu-Chr5 23378535 23379179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu05g02015 5 190 Type I MADS-box Gene Family AT5G60440 49.474 8.79e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu05g02015 SRF-TF 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g02015 - - mtr:MTR_1g106070 251.136